Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QMC72_RS13360 Genome accession   NZ_CP127095
Coordinates   2569188..2570336 (-) Length   382 a.a.
NCBI ID   WP_019257465.1    Uniprot ID   A0A9Q4EQT8
Organism   Bacillus inaquosorum strain LBA001     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2564188..2575336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS13330 (QMC72_13330) yclP 2564336..2565094 (-) 759 WP_003240196.1 petrobactin ABC transporter ATP-binding protein YclP -
  QMC72_RS13335 (QMC72_13335) yclO 2565088..2566035 (-) 948 WP_060397923.1 petrobactin ABC transporter permease YclO -
  QMC72_RS13340 (QMC72_13340) ceuB 2566028..2566978 (-) 951 WP_084994566.1 petrobactin ABC transporter permease YclN Machinery gene
  QMC72_RS13345 (QMC72_13345) - 2567363..2568736 (+) 1374 WP_268274762.1 aspartate kinase -
  QMC72_RS13350 (QMC72_13350) - 2568879..2568986 (+) 108 WP_019257466.1 YjcZ family sporulation protein -
  QMC72_RS13355 (QMC72_13355) phrC 2569082..2569204 (-) 123 WP_003240188.1 phosphatase RapC inhibitor PhrC Regulator
  QMC72_RS13360 (QMC72_13360) rapC 2569188..2570336 (-) 1149 WP_019257465.1 response regulator aspartate phosphatase RapC Regulator
  QMC72_RS13365 (QMC72_13365) - 2570499..2571914 (-) 1416 WP_284107085.1 HAMP domain-containing sensor histidine kinase -
  QMC72_RS13370 (QMC72_13370) yclJ 2571901..2572584 (-) 684 WP_003240180.1 two-component system response regulator YclJ -
  QMC72_RS13375 (QMC72_13375) - 2572797..2574257 (+) 1461 WP_284107086.1 ABC transporter permease -
  QMC72_RS13380 (QMC72_13380) - 2574273..2574953 (+) 681 WP_133488494.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45718.80 Da        Isoelectric Point: 5.0594

>NTDB_id=841691 QMC72_RS13360 WP_019257465.1 2569188..2570336(-) (rapC) [Bacillus inaquosorum strain LBA001]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQKAQLVGRAYYNLGLCYYNQELLD
PAIDYFEKSVSTFESSRIINSLPQAYFLITLIYYKRGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFHYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=841691 QMC72_RS13360 WP_019257465.1 2569188..2570336(-) (rapC) [Bacillus inaquosorum strain LBA001]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAATGGTACAAATATATCCGGACATTCAGCGT
ACCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCACGATTCCAACTTGCTGCTCTATT
ATTCACTAATGGAATTCCGCCACCAGCTTATGCTTGATTATCTAGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATCGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTATGTGAATTTTTT
CCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTATAAACAGGCGGAGAAAAAGCTTTCCT
TTGTTGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACATACTTT
TCACTGATCAATATAAAAAACGCCTATGAAATTTATGTGGAGCAGGAAACCTATAATGTGAGAATTATTCAATGCCATTT
CGTATTCGGGGTCAACCTGATGGATGAAAGGAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCGAAATGGCCG
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTTGGGTTATGCTATTACAACCAAGAGCTTCTTGAC
CCTGCCATTGACTACTTTGAAAAATCGGTTTCCACGTTTGAAAGCAGCAGAATCATCAATTCGCTGCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACGGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTACGCGGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCATTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
CTACTATGAACAAAAATGGTTCAAACTGTCTGCTTCCTACTTTCTAAAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

97.382

100

0.974
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571