Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QMC72_RS10785 Genome accession   NZ_CP127095
Coordinates   2047907..2048551 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2042907..2053551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS10755 (QMC72_10755) - 2043324..2043692 (-) 369 WP_084991317.1 hypothetical protein -
  QMC72_RS10760 (QMC72_10760) - 2043805..2043972 (-) 168 WP_119914210.1 hypothetical protein -
  QMC72_RS10765 (QMC72_10765) degQ 2044152..2044292 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QMC72_RS10770 (QMC72_10770) - 2044477..2045337 (+) 861 WP_148982767.1 polyprenyl synthetase family protein -
  QMC72_RS10775 (QMC72_10775) comX 2045350..2045514 (+) 165 WP_015384519.1 competence pheromone ComX -
  QMC72_RS10780 (QMC72_10780) comP 2045526..2047826 (+) 2301 WP_119914209.1 histidine kinase Regulator
  QMC72_RS10785 (QMC72_10785) comA 2047907..2048551 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QMC72_RS10790 (QMC72_10790) - 2048570..2048950 (+) 381 WP_284106914.1 hotdog fold thioesterase -
  QMC72_RS10795 (QMC72_10795) mnhG 2048989..2049363 (-) 375 WP_060399388.1 monovalent cation/H(+) antiporter subunit G -
  QMC72_RS10800 (QMC72_10800) - 2049347..2049631 (-) 285 WP_003241049.1 Na(+)/H(+) antiporter subunit F1 -
  QMC72_RS10805 (QMC72_10805) - 2049631..2050107 (-) 477 WP_003241050.1 Na+/H+ antiporter subunit E -
  QMC72_RS10810 (QMC72_10810) - 2050113..2051594 (-) 1482 WP_088112166.1 Na+/H+ antiporter subunit D -
  QMC72_RS10815 (QMC72_10815) - 2051587..2051928 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QMC72_RS10820 (QMC72_10820) - 2051928..2052359 (-) 432 WP_003241054.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=841687 QMC72_RS10785 WP_003220716.1 2047907..2048551(+) (comA) [Bacillus inaquosorum strain LBA001]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=841687 QMC72_RS10785 WP_003220716.1 2047907..2048551(+) (comA) [Bacillus inaquosorum strain LBA001]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTTATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAATCGAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTATTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1