Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QMC72_RS08845 Genome accession   NZ_CP127095
Coordinates   1662013..1662735 (+) Length   240 a.a.
NCBI ID   WP_060399597.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1657013..1667735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS08820 (QMC72_08820) degS 1657323..1658480 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  QMC72_RS08825 (QMC72_08825) degU 1658563..1659252 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QMC72_RS08830 (QMC72_08830) - 1659350..1660195 (+) 846 WP_284106859.1 DegV family protein -
  QMC72_RS08835 (QMC72_08835) comFA 1660300..1661685 (+) 1386 WP_284106858.1 ATP-dependent helicase ComFA Machinery gene
  QMC72_RS08840 (QMC72_08840) comFB 1661753..1662049 (+) 297 WP_003235460.1 late competence protein ComFB -
  QMC72_RS08845 (QMC72_08845) comFC 1662013..1662735 (+) 723 WP_060399597.1 ComF family protein Machinery gene
  QMC72_RS08850 (QMC72_08850) - 1662808..1663227 (+) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  QMC72_RS08855 (QMC72_08855) flgM 1663307..1663573 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMC72_RS08860 (QMC72_08860) flgN 1663589..1664071 (+) 483 WP_284106857.1 flagellar protein FlgN -
  QMC72_RS08865 (QMC72_08865) flgK 1664090..1665607 (+) 1518 WP_133485813.1 flagellar hook-associated protein FlgK -
  QMC72_RS08870 (QMC72_08870) flgL 1665617..1666513 (+) 897 WP_133485815.1 flagellar hook-associated protein FlgL -
  QMC72_RS08875 (QMC72_08875) - 1666559..1667122 (+) 564 WP_133485817.1 DUF6470 family protein -
  QMC72_RS08880 (QMC72_08880) fliW 1667156..1667587 (+) 432 WP_284106856.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27416.72 Da        Isoelectric Point: 9.6833

>NTDB_id=841682 QMC72_RS08845 WP_060399597.1 1662013..1662735(+) (comFC) [Bacillus inaquosorum strain LBA001]
MPNEAGGGIHKLICLLCDSQFSQAVTWSALFLLKPDEKVCHSCRSKFKKITGQICTLCGRPQSVHAVCRDCKVWKSRVSA
SLLLRQNRSVYTYNERMKETLSRFKFRGDAEIINAFKSDFSSTFSEVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSTEGMNIILIDDLYTTGATLHFAARCLLEKGKARSVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=841682 QMC72_RS08845 WP_060399597.1 1662013..1662735(+) (comFC) [Bacillus inaquosorum strain LBA001]
ATGCCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTCTATTGTGCGATTCACAATTTTCTCAAGCTGTTACATG
GAGCGCCCTTTTTTTATTAAAGCCTGACGAAAAGGTCTGTCATTCCTGCAGAAGCAAATTTAAGAAAATCACAGGACAAA
TCTGCACCTTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAGAGATTGCAAGGTGTGGAAATCAAGGGTCAGTGCC
AGTTTGCTGCTCCGCCAAAACCGTTCAGTTTACACATATAATGAAAGAATGAAAGAAACGCTTTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTCTCAGAGGTTTACCCCGATAAGCATTTTG
TTCTCGTTCCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCGCAGCTCCTGGCAGAATGCTTA
GATCGGCCTATCCACCATCCCCTTATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
GGAGCGTATTTTTGATACAAAAAACAACTCAACCGAAGGAATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCCGTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.833

100

0.908