Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QMC72_RS08835 Genome accession   NZ_CP127095
Coordinates   1660300..1661685 (+) Length   461 a.a.
NCBI ID   WP_284106858.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain LBA001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655300..1666685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS08810 (QMC72_08810) - 1655331..1656452 (-) 1122 WP_133485809.1 LCP family protein -
  QMC72_RS08815 (QMC72_08815) - 1656452..1657105 (-) 654 WP_284106860.1 YigZ family protein -
  QMC72_RS08820 (QMC72_08820) degS 1657323..1658480 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  QMC72_RS08825 (QMC72_08825) degU 1658563..1659252 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QMC72_RS08830 (QMC72_08830) - 1659350..1660195 (+) 846 WP_284106859.1 DegV family protein -
  QMC72_RS08835 (QMC72_08835) comFA 1660300..1661685 (+) 1386 WP_284106858.1 ATP-dependent helicase ComFA Machinery gene
  QMC72_RS08840 (QMC72_08840) comFB 1661753..1662049 (+) 297 WP_003235460.1 late competence protein ComFB -
  QMC72_RS08845 (QMC72_08845) comFC 1662013..1662735 (+) 723 WP_060399597.1 ComF family protein Machinery gene
  QMC72_RS08850 (QMC72_08850) - 1662808..1663227 (+) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  QMC72_RS08855 (QMC72_08855) flgM 1663307..1663573 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMC72_RS08860 (QMC72_08860) flgN 1663589..1664071 (+) 483 WP_284106857.1 flagellar protein FlgN -
  QMC72_RS08865 (QMC72_08865) flgK 1664090..1665607 (+) 1518 WP_133485813.1 flagellar hook-associated protein FlgK -
  QMC72_RS08870 (QMC72_08870) flgL 1665617..1666513 (+) 897 WP_133485815.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52338.41 Da        Isoelectric Point: 9.9409

>NTDB_id=841681 QMC72_RS08835 WP_284106858.1 1660300..1661685(+) (comFA) [Bacillus inaquosorum strain LBA001]
MLIVPAEKNISFSKELQQTLQSRQLLRTELPFSDEMIEWHIKNGYIAAQNSISVNKRGYRCNRCGQNDQRYFSFYHSSGK
NQLYCRSCVMMGRVSEDVPLYSWIEEDEPNWQPIKLTWNGQLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPG
IESALNQRLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGCEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTLNGQLHSVRIPARHHKKPLPEPRFVWCGNWKKKLNRNKVPLAVK
RWIAFHVKEGRPVFLFVPSVSVMEKAASGFKDVNCRTAFVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTG
VLGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNDLAAKNE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=841681 QMC72_RS08835 WP_284106858.1 1660300..1661685(+) (comFA) [Bacillus inaquosorum strain LBA001]
ATGCTCATTGTGCCAGCTGAAAAGAACATTTCTTTCTCAAAAGAATTGCAGCAGACACTTCAAAGCCGTCAGTTGCTCAG
AACTGAACTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAAAATGGCTATATCGCCGCTCAAAACTCTATATCCG
TAAATAAACGGGGGTATAGGTGTAATAGGTGCGGCCAAAATGACCAGCGGTATTTTTCTTTTTATCATTCATCTGGAAAG
AATCAGCTGTATTGCCGTTCTTGTGTCATGATGGGCAGAGTGAGTGAAGATGTTCCTTTATATTCATGGATAGAGGAGGA
TGAACCCAATTGGCAGCCTATCAAGCTTACGTGGAATGGCCAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAA
TTGAGGCTATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAGATGCTATTCCCCGGT
ATAGAATCCGCGTTAAATCAAAGACTGCGTGTTTGTATTGCGACACCCCGCACTGATGTTGTATTAGAGCTAGCTCCGAG
ACTCAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTATGGAGGATGCGAGGACAAAGGGCGGTTATCTCCGCTTA
TGATTTCCACTACACATCAACTCTTGCGATATAAAGACGCATTTGACGTTATGATCGTTGATGAAGTTGATGCTTTTCCG
TATTCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACTCTTGTTTACTTAAGTGCAAC
ACCCCCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGCTACACTCAGTTCGGATTCCAGCAAGACACCACAAAAAAC
CTTTGCCAGAACCGCGCTTTGTATGGTGCGGAAACTGGAAAAAGAAATTAAACCGAAACAAAGTTCCGTTAGCTGTAAAA
AGATGGATAGCGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTATTTGTTCCCTCCGTTTCTGTTATGGAAAAGGCAGC
TTCCGGCTTTAAAGATGTCAATTGCCGAACAGCGTTTGTGCATGCGGAAGATAAGCACAGAAAAGAAAAAGTACAGCAGT
TCAGAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTTACGGTTCCCAAGGTGCAGACAGGT
GTATTAGGTGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGTCATAAAGAGCA
TGCGGATGGTGATGTCATTTTCTTTCACTACGGAAAAACTAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGA
ATGACTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(327-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

90.83

99.349

0.902