Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QMC72_RS08825 Genome accession   NZ_CP127095
Coordinates   1658563..1659252 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus inaquosorum strain LBA001     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653563..1664252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS08805 (QMC72_08805) - 1654183..1655259 (+) 1077 WP_003235474.1 MraY family glycosyltransferase -
  QMC72_RS08810 (QMC72_08810) - 1655331..1656452 (-) 1122 WP_133485809.1 LCP family protein -
  QMC72_RS08815 (QMC72_08815) - 1656452..1657105 (-) 654 WP_284106860.1 YigZ family protein -
  QMC72_RS08820 (QMC72_08820) degS 1657323..1658480 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  QMC72_RS08825 (QMC72_08825) degU 1658563..1659252 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QMC72_RS08830 (QMC72_08830) - 1659350..1660195 (+) 846 WP_284106859.1 DegV family protein -
  QMC72_RS08835 (QMC72_08835) comFA 1660300..1661685 (+) 1386 WP_284106858.1 ATP-dependent helicase ComFA Machinery gene
  QMC72_RS08840 (QMC72_08840) comFB 1661753..1662049 (+) 297 WP_003235460.1 late competence protein ComFB -
  QMC72_RS08845 (QMC72_08845) comFC 1662013..1662735 (+) 723 WP_060399597.1 ComF family protein Machinery gene
  QMC72_RS08850 (QMC72_08850) - 1662808..1663227 (+) 420 WP_003235455.1 TIGR03826 family flagellar region protein -
  QMC72_RS08855 (QMC72_08855) flgM 1663307..1663573 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMC72_RS08860 (QMC72_08860) flgN 1663589..1664071 (+) 483 WP_284106857.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=841680 QMC72_RS08825 WP_003219701.1 1658563..1659252(+) (degU) [Bacillus inaquosorum strain LBA001]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=841680 QMC72_RS08825 WP_003219701.1 1658563..1659252(+) (degU) [Bacillus inaquosorum strain LBA001]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGCATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGCGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTACAAAAAATGAATGTGAACGACCGGA
CGCAAGCTGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1