Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QMC72_RS07695 Genome accession   NZ_CP127095
Coordinates   1429457..1429576 (-) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus inaquosorum strain LBA001     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424457..1434576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS07675 (QMC72_07675) - 1424810..1426885 (-) 2076 WP_284107243.1 transglycosylase domain-containing protein -
  QMC72_RS07680 (QMC72_07680) speE 1427087..1427917 (+) 831 WP_003227543.1 spermidine synthase -
  QMC72_RS07685 (QMC72_07685) speB 1427978..1428850 (+) 873 WP_119914420.1 agmatinase -
  QMC72_RS07690 (QMC72_07690) - 1428886..1429359 (-) 474 Protein_1515 YbaK/EbsC family protein -
  QMC72_RS07695 (QMC72_07695) phrF 1429457..1429576 (-) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  QMC72_RS07700 (QMC72_07700) rapF 1429560..1430705 (-) 1146 WP_232919982.1 response regulator aspartate phosphatase RapF Regulator
  QMC72_RS07705 (QMC72_07705) - 1430935..1432290 (+) 1356 WP_232919983.1 YncE family protein -
  QMC72_RS07710 (QMC72_07710) - 1432330..1433706 (+) 1377 WP_232919984.1 YncE family protein -
  QMC72_RS07715 (QMC72_07715) - 1433713..1434414 (-) 702 WP_133485615.1 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=841674 QMC72_RS07695 WP_003222023.1 1429457..1429576(-) (phrF) [Bacillus inaquosorum strain LBA001]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=841674 QMC72_RS07695 WP_003222023.1 1429457..1429576(-) (phrF) [Bacillus inaquosorum strain LBA001]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACGAATATTGCAAACGCACC
TACACACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487