Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VR553_RS14525 Genome accession   NZ_CP142680
Coordinates   2974865..2975494 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain FG31-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969865..2980494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR553_RS14510 (VR553_14485) helD 2970107..2972161 (-) 2055 WP_000420536.1 DNA helicase IV -
  VR553_RS14515 (VR553_14490) yccF 2972284..2972730 (+) 447 WP_001261235.1 YccF domain-containing protein -
  VR553_RS14520 (VR553_14495) yccS 2972740..2974902 (+) 2163 WP_000875019.1 YccS family putative transporter -
  VR553_RS14525 (VR553_14500) sxy/tfoX 2974865..2975494 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VR553_RS14530 (VR553_14505) sulA 2975713..2976222 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VR553_RS14535 (VR553_14510) ompA 2976579..2977631 (+) 1053 WP_000750419.1 porin OmpA -
  VR553_RS14540 (VR553_14515) matP 2977706..2978158 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  VR553_RS14545 (VR553_14520) ycbZ 2978344..2980104 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=841665 VR553_RS14525 WP_000839153.1 2974865..2975494(-) (sxy/tfoX) [Escherichia coli strain FG31-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=841665 VR553_RS14525 WP_000839153.1 2974865..2975494(-) (sxy/tfoX) [Escherichia coli strain FG31-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1