Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QMC72_RS03195 Genome accession   NZ_CP127095
Coordinates   594331..594666 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus inaquosorum strain LBA001     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 589331..599666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMC72_RS03145 (QMC72_03145) comGC 589344..589640 (+) 297 WP_003236957.1 comG operon protein ComGC Machinery gene
  QMC72_RS03150 (QMC72_03150) comGD 589630..590061 (+) 432 WP_284107349.1 competence type IV pilus minor pilin ComGD Machinery gene
  QMC72_RS03155 (QMC72_03155) comGE 590045..590392 (+) 348 WP_133486963.1 competence type IV pilus minor pilin ComGE Machinery gene
  QMC72_RS03160 (QMC72_03160) comGF 590418..590801 (+) 384 WP_133486965.1 competence type IV pilus minor pilin ComGF Machinery gene
  QMC72_RS03165 (QMC72_03165) comGG 590802..591176 (+) 375 WP_284107348.1 competence type IV pilus minor pilin ComGG Machinery gene
  QMC72_RS03170 (QMC72_03170) - 591247..591426 (+) 180 WP_003236949.1 YqzE family protein -
  QMC72_RS03175 (QMC72_03175) - 591468..591794 (-) 327 WP_029316858.1 YqzG/YhdC family protein -
  QMC72_RS03180 (QMC72_03180) tapA 592067..592831 (+) 765 WP_133486967.1 amyloid fiber anchoring/assembly protein TapA -
  QMC72_RS03185 (QMC72_03185) sipW 592815..593387 (+) 573 WP_133487330.1 signal peptidase I SipW -
  QMC72_RS03190 (QMC72_03190) tasA 593451..594236 (+) 786 WP_003236939.1 biofilm matrix protein TasA -
  QMC72_RS03195 (QMC72_03195) sinR 594331..594666 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QMC72_RS03200 (QMC72_03200) sinI 594700..594873 (-) 174 WP_003226347.1 anti-repressor SinI Regulator
  QMC72_RS03205 (QMC72_03205) - 595058..595852 (-) 795 WP_133486969.1 YqhG family protein -
  QMC72_RS03210 (QMC72_03210) - 595873..597546 (-) 1674 WP_003236934.1 SNF2-related protein -
  QMC72_RS03215 (QMC72_03215) gcvT 597990..599078 (+) 1089 WP_133486971.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=841665 QMC72_RS03195 WP_003226345.1 594331..594666(-) (sinR) [Bacillus inaquosorum strain LBA001]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=841665 QMC72_RS03195 WP_003226345.1 594331..594666(-) (sinR) [Bacillus inaquosorum strain LBA001]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1