Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QQW97_RS12820 Genome accession   NZ_CP127089
Coordinates   2395399..2395734 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain KK026     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390399..2400734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQW97_RS12800 (QQW97_12795) gcvT 2390991..2392079 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  QQW97_RS12805 (QQW97_12800) hepAA 2392521..2394194 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  QQW97_RS12810 (QQW97_12805) yqhG 2394215..2395009 (+) 795 WP_003230200.1 YqhG family protein -
  QQW97_RS12815 (QQW97_12810) sinI 2395192..2395365 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  QQW97_RS12820 (QQW97_12815) sinR 2395399..2395734 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QQW97_RS12825 (QQW97_12820) tasA 2395827..2396612 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  QQW97_RS12830 (QQW97_12825) sipW 2396676..2397248 (-) 573 WP_003246088.1 signal peptidase I SipW -
  QQW97_RS12835 (QQW97_12830) tapA 2397232..2397993 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  QQW97_RS12840 (QQW97_12835) yqzG 2398265..2398591 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QQW97_RS12845 (QQW97_12840) spoIITA 2398633..2398812 (-) 180 WP_003230176.1 YqzE family protein -
  QQW97_RS12850 (QQW97_12845) comGG 2398883..2399257 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  QQW97_RS12855 (QQW97_12850) comGF 2399258..2399641 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  QQW97_RS12860 (QQW97_12855) comGE 2399667..2400014 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QQW97_RS12865 (QQW97_12860) comGD 2399998..2400429 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  QQW97_RS12870 (QQW97_12865) comGC 2400419..2400715 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=841534 QQW97_RS12820 WP_003226345.1 2395399..2395734(+) (sinR) [Bacillus subtilis strain KK026]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=841534 QQW97_RS12820 WP_003226345.1 2395399..2395734(+) (sinR) [Bacillus subtilis strain KK026]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1