Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NL111_RS00040 Genome accession   NZ_CP127012
Coordinates   9653..10174 (+) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus sp. AC40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4653..15174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL111_RS00030 gyrA 6624..9143 (+) 2520 WP_128211352.1 DNA gyrase subunit A -
  NL111_RS00035 rpsF 9329..9616 (+) 288 WP_002829317.1 30S ribosomal protein S6 -
  NL111_RS00040 ssb 9653..10174 (+) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  NL111_RS00045 rpsR 10204..10440 (+) 237 WP_002829315.1 30S ribosomal protein S18 -
  NL111_RS00050 - 10653..12650 (+) 1998 WP_159217873.1 DHH family phosphoesterase -
  NL111_RS00055 rplI 12656..13108 (+) 453 WP_002830768.1 50S ribosomal protein L9 -
  NL111_RS00060 dnaB 13158..14555 (+) 1398 WP_285110266.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=841197 NL111_RS00040 WP_002829316.1 9653..10174(+) (ssb) [Pediococcus sp. AC40]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=841197 NL111_RS00040 WP_002829316.1 9653..10174(+) (ssb) [Pediococcus sp. AC40]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGCGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGCAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAACGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376