Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QQF68_RS08000 Genome accession   NZ_CP126992
Coordinates   1707423..1709639 (+) Length   738 a.a.
NCBI ID   WP_057417603.1    Uniprot ID   A0A0P9KAB7
Organism   Pseudomonas syringae pv. antirrhini str. 126     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702423..1714639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQF68_RS07985 (QQF68_07985) - 1703900..1704313 (-) 414 WP_233594514.1 toxin VasX -
  QQF68_RS07990 (QQF68_07990) - 1704310..1705161 (-) 852 WP_011104750.1 DUF4123 domain-containing protein -
  QQF68_RS07995 (QQF68_07995) - 1705158..1707185 (-) 2028 WP_057417604.1 type VI secretion system tip protein VgrG -
  QQF68_RS08000 (QQF68_08000) comA 1707423..1709639 (+) 2217 WP_057417603.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QQF68_RS08005 (QQF68_08005) exbB 1709683..1710399 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QQF68_RS08010 (QQF68_08010) - 1710396..1710827 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  QQF68_RS08015 (QQF68_08015) lpxK 1710827..1711822 (+) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  QQF68_RS08020 (QQF68_08020) - 1711840..1712025 (+) 186 WP_003381112.1 Trm112 family protein -
  QQF68_RS08025 (QQF68_08025) kdsB 1712022..1712786 (+) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQF68_RS08030 (QQF68_08030) murB 1712821..1713840 (+) 1020 WP_057417602.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80689.03 Da        Isoelectric Point: 10.5961

>NTDB_id=841129 QQF68_RS08000 WP_057417603.1 1707423..1709639(+) (comA) [Pseudomonas syringae pv. antirrhini str. 126]
MRSGMIALALGLVALRFLPVLPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQQRLDGQTLWLQG
KVVGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLVVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLLSFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGTWSWWQSWTRAQWLIALGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPVPVVGEGLLWLAGGALQWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPNGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKVFLQAVAPLGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=841129 QQF68_RS08000 WP_057417603.1 1707423..1709639(+) (comA) [Pseudomonas syringae pv. antirrhini str. 126]
ATGCGCTCAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGCCCTGCGCTTTCTGCCGGTTTTGCCGCCGACCTGGCTCTT
GTTGCTGATGCCGATACTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTTTCGGCGCAGTGGGCGTTGAACGACCGTTTGCAGCAACGGCTGGACGGCCAGACGCTGTGGCTGCAAGGC
AAAGTGGTCGGTTTGCCAAGCGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGCACGCCACGTCGCGGCGGGCGAAGTT
GCCTGCGTTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGTGGTTGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTTGCTGGCGTTATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATTGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGTGTGGTCTGGCCGTTTTTGCTTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGCGGCCGTCTGGGCAC
CTGGAGCTGGTGGCAGAGCTGGACTCGCGCGCAGTGGCTGATCGCTCTTGGCCTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTACTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCACTG
ATCGGCACGTTGCTGCTGCCGGTCCCCGTTGTTGGCGAGGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGCAATGGCTGTT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCATGGCTGTTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGCTGGCCATTGTTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCTGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACACTGCTCTACGATGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAACGGGTGGTCGTGC
CGGCGATGCGCAAGTCCGGTGTTCGTCACTTGGACCTGATGCTGATCAGCCATGCCGATGCGGATCATGCCGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGCGTGCTGGGCGGGGAACTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCAACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTGCTGCTGACGGGCGACATTGATGTGCACGCCGAG
CGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCACTGGTTGCAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCGGTTGCGCCGCTGGGCGTGCTGATTTCCCGTGGGCAGAACAATGCTTTCGGTCATCCGCATC
CGTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9KAB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.966

97.019

0.621
  comA Ralstonia pseudosolanacearum GMI1000

32.381

100

0.369