Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QQF68_RS08005 Genome accession   NZ_CP126992
Coordinates   1709683..1710399 (+) Length   238 a.a.
NCBI ID   WP_007245835.1    Uniprot ID   A0A2G7MEY6
Organism   Pseudomonas syringae pv. antirrhini str. 126     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704683..1715399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQF68_RS07995 (QQF68_07995) - 1705158..1707185 (-) 2028 WP_057417604.1 type VI secretion system tip protein VgrG -
  QQF68_RS08000 (QQF68_08000) comA 1707423..1709639 (+) 2217 WP_057417603.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QQF68_RS08005 (QQF68_08005) exbB 1709683..1710399 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QQF68_RS08010 (QQF68_08010) - 1710396..1710827 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  QQF68_RS08015 (QQF68_08015) lpxK 1710827..1711822 (+) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  QQF68_RS08020 (QQF68_08020) - 1711840..1712025 (+) 186 WP_003381112.1 Trm112 family protein -
  QQF68_RS08025 (QQF68_08025) kdsB 1712022..1712786 (+) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQF68_RS08030 (QQF68_08030) murB 1712821..1713840 (+) 1020 WP_057417602.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25863.42 Da        Isoelectric Point: 7.9105

>NTDB_id=841130 QQF68_RS08005 WP_007245835.1 1709683..1710399(+) (exbB) [Pseudomonas syringae pv. antirrhini str. 126]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=841130 QQF68_RS08005 WP_007245835.1 1709683..1710399(+) (exbB) [Pseudomonas syringae pv. antirrhini str. 126]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCC
GATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGC
CGCACCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAAAGAAACTCGATAACGAAAAGCTCAAGCAGTTGCGCGCCGAC
TCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAATTCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGA
AGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCG
GTCTGCTCGGTACGGTGCTGGGCATGATCGAGATCTTCGGTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTG
CTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACCGCATCGGGCCTTATCGTCGCGATCCCGGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAAATCGACCTCAAGTCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7MEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693