Detailed information NTG0841119

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QQF68_RS03440
• Genome accession: NZ_CP126992
• Coordinates: 710250..711590 (-)
• Length: 446 a.a.
• NCBI ID: WP_007246759.1
• Uniprot ID: A0AB38EKK0
• Organism: Pseudomonas syringae pv. antirrhini str. 126
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 705250..716590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQF68_RS03430 (QQF68_03430)	-	707962..709077 (-)	1116	WP_005769274.1	efflux RND transporter periplasmic adaptor subunit	-
QQF68_RS03435 (QQF68_03435)	-	709159..709776 (-)	618	WP_057418191.1	TetR/AcrR family transcriptional regulator	-
QQF68_RS03440 (QQF68_03440)	pilR	710250..711590 (-)	1341	WP_007246759.1	sigma-54 dependent transcriptional regulator	Regulator
QQF68_RS03445 (QQF68_03445)	pilS	711593..713188 (-)	1596	WP_024667032.1	ATP-binding protein	Regulator
QQF68_RS03450 (QQF68_03450)	-	713178..713417 (-)	240	WP_057403016.1	PP0621 family protein	-
QQF68_RS03455 (QQF68_03455)	-	713551..714573 (-)	1023	WP_005769279.1	outer membrane protein assembly factor BamD	-
QQF68_RS03460 (QQF68_03460)	rluD	714723..715685 (+)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QQF68_RS03465 (QQF68_03465)	pgeF	715682..716410 (+)	729	WP_057419060.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49943.93 Da
• Isoelectric Point: 6.5611

>NTDB_id=841119 QQF68_RS03440 WP_007246759.1 710250..711590(-) (pilR) [Pseudomonas syringae pv. antirrhini str. 126]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSATQPVHSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNIEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGNGAQPVARLHAHALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERTLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=841119 QQF68_RS03440 WP_007246759.1 710250..711590(-) (pilR) [Pseudomonas syringae pv. antirrhini str. 126]
ATGAGCCAACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACGCGCAGCGCCCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACCGCCCACGGCAACCTGGACACGGCGATTCATGCGTTAAAAGCCGGGGCCTTCGATTTCGTGACCAAACCGGT
GGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCTCTGAGCCTGCCCTCCGCCACTCAACCGGTGCACAGCATCGACA
GCCGTCTGCTGGGTGATTCGCCGCCGATGCGCACCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCACCCATC
TACATCAGCGGCGAATCGGGCAGTGGCAAAGAGCTGGTAGCCCGGCTGATTCACGAGCAAGGGCCGCGCATCGACAAACC
GTTCGTGCCGGTCAACTGCGGGGCTATCCCTTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCAGGGTTGTTTCAGGCGGCGCACAACGGCACGCTGTTTCTTGATGAGGTCGCTGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTTGACGTGCGCATTCTATGCGCCACCCACAAGGACCTGAATATCGAAGTCGCTGCAGGTCGTTTCCGTCAGGACCTGT
ATTACCGACTGAACGTGATCGAACTGCGCGTACCTTCACTGCGCGAGCGGCGTGAGGATATCGATCAGTTGGCAGCCAGT
GTTTTGCGACGACTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCCTGCATGCGCATGCACTGGAAACGCTAAAAAGTTA
TCGATTCCCCGGGAACGTGCGCGAACTGGAAAACATGCTGGAACGCGCTTACACCCTCTGTGAAAACGATGAGATCCACG
CCAGCGACCTGCGTCTGGCAGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCACACTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCAGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGTTACCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.104	99.327	0.776
pilR	Acinetobacter baumannii strain A118	48.491	100	0.504