Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QQF68_RS03445 Genome accession   NZ_CP126992
Coordinates   711593..713188 (-) Length   531 a.a.
NCBI ID   WP_024667032.1    Uniprot ID   A0A0P9NM19
Organism   Pseudomonas syringae pv. antirrhini str. 126     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 706593..718188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQF68_RS03430 (QQF68_03430) - 707962..709077 (-) 1116 WP_005769274.1 efflux RND transporter periplasmic adaptor subunit -
  QQF68_RS03435 (QQF68_03435) - 709159..709776 (-) 618 WP_057418191.1 TetR/AcrR family transcriptional regulator -
  QQF68_RS03440 (QQF68_03440) pilR 710250..711590 (-) 1341 WP_007246759.1 sigma-54 dependent transcriptional regulator Regulator
  QQF68_RS03445 (QQF68_03445) pilS 711593..713188 (-) 1596 WP_024667032.1 ATP-binding protein Regulator
  QQF68_RS03450 (QQF68_03450) - 713178..713417 (-) 240 WP_057403016.1 PP0621 family protein -
  QQF68_RS03455 (QQF68_03455) - 713551..714573 (-) 1023 WP_005769279.1 outer membrane protein assembly factor BamD -
  QQF68_RS03460 (QQF68_03460) rluD 714723..715685 (+) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQF68_RS03465 (QQF68_03465) pgeF 715682..716410 (+) 729 WP_057419060.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58360.21 Da        Isoelectric Point: 6.8652

>NTDB_id=841120 QQF68_RS03445 WP_024667032.1 711593..713188(-) (pilS) [Pseudomonas syringae pv. antirrhini str. 126]
MTAETPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGIVVLDARRQVVLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAAAD
QSIHVQISPGMLTTRMDAGQLTQIITNLVQNGLRYSRRNHPSAQVWLNLHHDRESDLPILEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYIPRPHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=841120 QQF68_RS03445 WP_024667032.1 711593..713188(-) (pilS) [Pseudomonas syringae pv. antirrhini str. 126]
GTGACCGCTGAGACGCCTTCGCTTACCAGCCCGCAGGCGCAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGCCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTT
CGGGCTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAGCGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACCGACGCAATCATGCTTTCCGGGCTGTTTTATGCGGCGGGCGGGCCGTCGAGCGGCATCGGCAACCT
GTTGATCGCATCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGCATCGGCCTGTTGATCGCTGCTGTTTCTGCCATTG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGTTCTCTGGGT
GCGCTGTGCTTCGCCGCCGCGCTGTTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAACG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAATGCGCTGATCCTGCAGCGCATGCGCACCGGCATTGTGGTGCTGGATG
CGCGCCGCCAGGTGGTGCTGGCCAATCAGGGGGCCTTGACCCTGCTCGGCCATGAACGATTGGTCGGTCAGGTCATCGAC
GCTTACTCGCCGCAGTTGGTCGAGCGCCTGCGCCAGTGGCTGATCAACCCGATCATGGTGCCGCGCAGCATCACCACCTC
ATCTATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGTCAAACGCTGATCTTCCTTGAAG
ATCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAACTTGCTGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAA
ATACGCAACCCGTTGGGTGCGGTCAGCCATGCTGCGCAGTTACTCAACGAGTCGGAAGACCTCAGCGCGCCGGATCGCCG
TCTGGGGCAGATCATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAATTGTCTCGCCGACGCG
AAGCACAACCCGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGTAGCTCGGCCGCTGCGGAT
CAGTCGATTCATGTGCAAATAAGCCCAGGCATGCTGACCACTCGCATGGACGCCGGGCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCCTACGCTACAGCCGCCGCAATCACCCGTCGGCGCAGGTCTGGCTGAACCTGCACCATGACCGGG
AAAGCGATTTACCCATCCTGGAAGTGCTGGACGACGGGCCGGGTGTCAGCGAACAACACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACGGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATATATCCCCCGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9NM19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.842

100

0.62