Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QQF37_RS10710 Genome accession   NZ_CP126986
Coordinates   2274602..2274937 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain MC2S-6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2269602..2279937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQF37_RS10690 (QQF37_10690) gcvT 2270209..2271309 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  QQF37_RS10695 (QQF37_10695) - 2271732..2273402 (+) 1671 WP_032874031.1 SNF2-related protein -
  QQF37_RS10700 (QQF37_10700) - 2273424..2274218 (+) 795 WP_007612541.1 YqhG family protein -
  QQF37_RS10705 (QQF37_10705) sinI 2274395..2274568 (+) 174 WP_032874029.1 anti-repressor SinI Regulator
  QQF37_RS10710 (QQF37_10710) sinR 2274602..2274937 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QQF37_RS10715 (QQF37_10715) - 2274985..2275770 (-) 786 WP_032874027.1 biofilm matrix protein TasA -
  QQF37_RS10720 (QQF37_10720) - 2275835..2276419 (-) 585 WP_032874025.1 signal peptidase I SipW -
  QQF37_RS10725 (QQF37_10725) tapA 2276391..2277062 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  QQF37_RS10730 (QQF37_10730) - 2277321..2277650 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  QQF37_RS10735 (QQF37_10735) - 2277691..2277870 (-) 180 WP_022552966.1 YqzE family protein -
  QQF37_RS10740 (QQF37_10740) comGG 2277927..2278304 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  QQF37_RS10745 (QQF37_10745) comGF 2278305..2278805 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  QQF37_RS10750 (QQF37_10750) comGE 2278714..2279028 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  QQF37_RS10755 (QQF37_10755) comGD 2279012..2279449 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  QQF37_RS10760 (QQF37_10760) comGC 2279439..2279705 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=841052 QQF37_RS10710 WP_003153104.1 2274602..2274937(+) (sinR) [Bacillus velezensis strain MC2S-6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=841052 QQF37_RS10710 WP_003153104.1 2274602..2274937(+) (sinR) [Bacillus velezensis strain MC2S-6]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991