Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QP019_RS09020 Genome accession   NZ_CP126978
Coordinates   1839172..1839501 (+) Length   109 a.a.
NCBI ID   WP_013746361.1    Uniprot ID   F4HBV2
Organism   Gallibacterium anatis strain YJ922     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834172..1844501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS09005 (QP019_09005) galU 1834999..1835886 (+) 888 WP_039092548.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QP019_RS09010 (QP019_09010) glpT 1836233..1837690 (+) 1458 WP_264779799.1 glycerol-3-phosphate transporter -
  QP019_RS09015 (QP019_09015) glpQ 1837882..1838976 (+) 1095 WP_285096074.1 glycerophosphodiester phosphodiesterase -
  QP019_RS09020 (QP019_09020) comEA/comE1 1839172..1839501 (+) 330 WP_013746361.1 helix-hairpin-helix domain-containing protein Machinery gene
  QP019_RS09025 (QP019_09025) fis 1839583..1839879 (-) 297 WP_013746362.1 DNA-binding transcriptional regulator Fis -
  QP019_RS09030 (QP019_09030) dusB 1839908..1840882 (-) 975 WP_013746363.1 tRNA dihydrouridine synthase DusB -
  QP019_RS09035 (QP019_09035) - 1841209..1844250 (+) 3042 WP_285096075.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11558.21 Da        Isoelectric Point: 7.2030

>NTDB_id=840986 QP019_RS09020 WP_013746361.1 1839172..1839501(+) (comEA/comE1) [Gallibacterium anatis strain YJ922]
MKLKHLFALTFGSLALLSGSVAVAESANPPPATETAQLQQAAQSDKVNLNTATAEQLQKGLVGIGAKKAQAIVEYREQHG
PFVSVEQITEVKGIGSAIFEKNKDRLAIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=840986 QP019_RS09020 WP_013746361.1 1839172..1839501(+) (comEA/comE1) [Gallibacterium anatis strain YJ922]
ATGAAATTAAAACATTTATTTGCGTTAACTTTCGGTTCACTAGCACTGTTGTCCGGTTCGGTTGCGGTAGCGGAAAGCGC
CAATCCGCCGCCGGCAACTGAAACGGCACAACTCCAACAGGCGGCACAGAGCGATAAAGTGAATTTAAATACTGCCACTG
CTGAACAGTTACAGAAAGGATTGGTCGGTATTGGTGCGAAAAAGGCACAGGCGATTGTCGAGTATCGTGAGCAGCACGGG
CCGTTTGTTTCTGTGGAACAGATTACCGAAGTAAAAGGAATCGGTTCAGCTATTTTTGAAAAAAATAAAGATCGTCTAGC
GATTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HBV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.649

100

0.495
  comE1/comEA Haemophilus influenzae Rd KW20

48.182

100

0.486
  comEA Acinetobacter baylyi ADP1

39.535

100

0.468
  comEA Bacillus subtilis subsp. subtilis str. 168

46.067

81.651

0.376