Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QP018_RS11395 Genome accession   NZ_CP126975
Coordinates   2406951..2408147 (-) Length   398 a.a.
NCBI ID   WP_039153404.1    Uniprot ID   A0AAX3XBY3
Organism   Gallibacterium anatis strain BJF12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2401951..2413147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS11365 (QP018_11365) - 2401951..2402352 (+) 402 WP_035687879.1 glutamyl-tRNA amidotransferase -
  QP018_RS11370 (QP018_11370) - 2402345..2403574 (+) 1230 WP_039151237.1 cytosine permease -
  QP018_RS11375 (QP018_11375) - 2403603..2404292 (-) 690 WP_039096637.1 DUF2877 domain-containing protein -
  QP018_RS11380 (QP018_11380) - 2404389..2405297 (+) 909 WP_039096636.1 carbamate kinase -
  QP018_RS11385 (QP018_11385) recX 2405625..2406083 (-) 459 WP_039096646.1 recombination regulator RecX -
  QP018_RS11390 (QP018_11390) - 2406108..2406761 (+) 654 WP_039153406.1 IS1595 family transposase -
  QP018_RS11395 (QP018_11395) dprA 2406951..2408147 (-) 1197 WP_039153404.1 DNA-processing protein DprA Machinery gene
  QP018_RS11400 (QP018_11400) def 2408346..2408861 (+) 516 WP_013746032.1 peptide deformylase -
  QP018_RS11405 (QP018_11405) - 2409243..2409966 (+) 724 Protein_2217 RNA-guided endonuclease TnpB family protein -
  QP018_RS11415 (QP018_11415) - 2410140..2410892 (+) 753 WP_013746033.1 DeoR/GlpR family DNA-binding transcription regulator -
  QP018_RS11420 (QP018_11420) fucI 2411112..2412869 (+) 1758 WP_013746034.1 L-fucose isomerase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 43337.74 Da        Isoelectric Point: 6.5697

>NTDB_id=840950 QP018_RS11395 WP_039153404.1 2406951..2408147(-) (dprA) [Gallibacterium anatis strain BJF12]
MQTVTTLLRLALLPQFGAIKIQQLLEQISLDTLLSYDRQTLSQIGWNAAQIQAWFSPPQAIIDTVLNWQQQADNHILHYF
DHSYPLLLKQTRSAPPLLFVKGNIDVLSSPQIAMVGSRYCSPYGEHYAQTIAGELAHSGITINSGLALGIDGICHRAALD
NHGKTVAVLGSGLDQLYPARHKKLAQQILENNGALLSELFPNTPPIAENFPRRNRIISGLSFGTIVIEASQKSGSLITAR
LALEQNREVFAVPGALDNPLSQGCHHLIKQGAWLIENAQDVLEILTPQISSLMPFTPAMETQTPIGNSSTAQSTIAISPQ
AKSGYTPPTINKKAVIKLDIPPQHQALMQQLNSATAISPDELSTALNRPIDQILTDLLELEMLGAVQQIQGGYIKNIV

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=840950 QP018_RS11395 WP_039153404.1 2406951..2408147(-) (dprA) [Gallibacterium anatis strain BJF12]
ATGCAAACAGTAACCACACTTTTACGTTTAGCACTGCTGCCGCAATTCGGTGCTATCAAAATTCAACAACTGCTTGAACA
AATCTCACTAGATACGCTGCTCAGCTACGATCGACAAACACTCAGCCAAATCGGTTGGAATGCTGCGCAAATTCAGGCTT
GGTTTTCACCGCCGCAAGCGATTATTGACACCGTTCTGAATTGGCAACAACAGGCAGACAACCATATTCTGCACTATTTT
GATCACAGTTACCCGCTGTTGTTGAAACAAACTCGCTCCGCACCGCCACTGCTGTTTGTTAAAGGTAACATTGATGTGCT
CTCTTCGCCACAAATCGCTATGGTAGGCAGTCGCTATTGTTCACCTTATGGCGAACATTACGCCCAAACCATCGCCGGCG
AACTGGCACATAGCGGCATCACCATTAACAGCGGTTTAGCCTTAGGCATTGATGGCATTTGTCATCGTGCCGCTTTGGAT
AATCACGGCAAAACCGTTGCTGTTTTGGGCAGCGGCTTGGATCAACTTTATCCGGCTCGCCACAAAAAATTGGCACAACA
AATTCTGGAAAACAACGGCGCATTGCTATCGGAACTATTTCCCAACACGCCGCCCATTGCTGAAAATTTTCCACGCCGAA
ACCGTATTATCAGCGGTCTCTCATTCGGCACCATCGTCATCGAAGCCTCGCAAAAAAGCGGTTCATTAATTACTGCACGT
CTGGCATTGGAACAAAATCGCGAAGTATTCGCCGTTCCAGGTGCATTGGACAATCCATTGAGTCAAGGTTGCCATCACTT
AATCAAACAAGGGGCGTGGTTAATTGAAAATGCACAGGATGTATTAGAGATTCTGACACCGCAAATCTCATCATTAATGC
CGTTTACACCAGCAATGGAGACACAAACGCCAATCGGCAATAGCTCTACTGCACAAAGCACGATCGCAATATCGCCACAA
GCAAAATCCGGTTACACGCCGCCGACCATCAACAAAAAAGCGGTGATCAAACTTGATATTCCGCCACAACATCAAGCATT
AATGCAACAATTAAACAGTGCAACTGCGATTTCACCGGATGAACTTTCGACTGCATTAAATCGCCCTATCGATCAAATTC
TTACCGATCTATTGGAACTGGAAATGCTCGGTGCAGTGCAACAAATCCAAGGAGGTTATATTAAAAATATCGTCTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-276)

DprA winged helix domain (DprA_WH)

(342-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

49.239

98.995

0.487
  dprA Haemophilus influenzae Rd KW20

51.63

92.462

0.477
  dprA Vibrio campbellii strain DS40M4

44.359

97.99

0.435
  dprA Legionella pneumophila strain ERS1305867

38.75

100

0.389