Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QPX86_RS06910 Genome accession   NZ_CP126972
Coordinates   1644262..1645299 (+) Length   345 a.a.
NCBI ID   WP_220753529.1    Uniprot ID   -
Organism   Shewanella goraebulensis strain DAU312     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1639262..1650299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX86_RS06880 rdgB 1639910..1640506 (-) 597 WP_285164713.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  QPX86_RS06885 - 1640684..1641130 (-) 447 WP_285164714.1 DUF4426 domain-containing protein -
  QPX86_RS06890 - 1641314..1641556 (-) 243 WP_285165146.1 DUF167 family protein -
  QPX86_RS06895 - 1641892..1642440 (-) 549 WP_285164715.1 YggT family protein -
  QPX86_RS06900 proC 1642514..1643332 (-) 819 WP_285164716.1 pyrroline-5-carboxylate reductase -
  QPX86_RS06905 - 1643537..1644226 (-) 690 WP_285164717.1 YggS family pyridoxal phosphate-dependent enzyme -
  QPX86_RS06910 pilT 1644262..1645299 (+) 1038 WP_220753529.1 type IV pilus twitching motility protein PilT Machinery gene
  QPX86_RS06915 pilU 1645311..1646423 (+) 1113 WP_220753528.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QPX86_RS06920 - 1646885..1647430 (+) 546 WP_285164718.1 glutathione peroxidase -
  QPX86_RS06925 hemH 1647591..1648604 (+) 1014 WP_285164719.1 ferrochelatase -
  QPX86_RS06930 ruvX 1648725..1649150 (-) 426 WP_285164720.1 Holliday junction resolvase RuvX -
  QPX86_RS06935 - 1649343..1649903 (-) 561 WP_220753524.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38184.69 Da        Isoelectric Point: 6.5577

>NTDB_id=840892 QPX86_RS06910 WP_220753529.1 1644262..1645299(+) (pilT) [Shewanella goraebulensis strain DAU312]
MEITELLAFSVKHNASDLHLSAGVSPMIRVDGEVRKINLPALDHQAVHGLVYDIMNDKQRKDFEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAGAVFRTIPSEILSLEQLGAPEIFKTISSFPRGLVLVTGPTGSGKSTTLAAMVDYINNERHDHILTIED
PIEFVHQNKQCLVNQREVHKHTHGFDAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTVDRI
VDVFPAGEKDMVRTMLSESLQAVISQTLIKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLEQCL
QNLVNRGLITRDDAMSKSSNKQANF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=840892 QPX86_RS06910 WP_220753529.1 1644262..1645299(+) (pilT) [Shewanella goraebulensis strain DAU312]
ATGGAAATAACTGAGTTACTTGCCTTTAGTGTAAAGCACAATGCCTCGGATCTACATCTTTCAGCAGGCGTTTCGCCAAT
GATCCGTGTAGATGGTGAAGTAAGAAAAATTAATTTACCAGCATTAGATCATCAGGCCGTACACGGTTTAGTGTATGACA
TCATGAACGATAAACAGCGTAAAGACTTCGAAGAACACTTAGAAATCGATTTCTCGTTCGAAGTACCTAACCTTGCTCGT
TTCCGTGTGAATGCTTTCAATCAGTCACGTGGTGCTGGTGCGGTTTTCCGTACGATTCCTAGTGAGATTTTATCATTAGA
GCAACTTGGCGCTCCAGAAATCTTTAAAACTATCTCAAGTTTCCCGCGTGGCCTTGTGTTGGTAACAGGTCCTACTGGCT
CGGGTAAGTCGACAACACTAGCTGCGATGGTTGATTACATCAATAACGAGCGACACGACCATATTCTAACCATTGAAGAC
CCGATAGAATTCGTGCATCAAAATAAACAATGTTTGGTTAACCAACGTGAAGTACATAAGCATACTCATGGGTTTGATGC
GGCGCTTCGAAGCGCGCTTCGTGAAGATCCCGATGTTATTCTTGTCGGTGAGATGCGTGACCTTGAAACCATTCGATTAG
CAATGACAGCTGCAGAAACGGGTCACTTAGTATTTGGTACTTTGCATACCACCTCAGCGGCAAAAACCGTCGACCGTATT
GTAGATGTATTCCCAGCAGGTGAGAAAGACATGGTGCGCACCATGTTATCTGAATCATTACAGGCTGTTATTTCACAAAC
CTTAATCAAAAAAGTGGGCGGCGGCCGAGTTGCAGCCCATGAAATCATGATGGGAACCCCGGCAATTCGTAACCTTATTC
GTGAAGATAAAGTCGCGCAAATGTATTCAGCTATTCAAACGGGTATGGCTCATGGTATGCAAACACTTGAGCAATGCTTA
CAGAACTTAGTGAATCGTGGCTTAATCACTCGTGACGATGCAATGTCTAAGAGTTCAAATAAGCAAGCTAACTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

77.971

100

0.78
  pilT Pseudomonas aeruginosa PAK

79.29

97.971

0.777
  pilT Acinetobacter nosocomialis M2

78.134

99.42

0.777
  pilT Acinetobacter baumannii D1279779

78.134

99.42

0.777
  pilT Acinetobacter baumannii strain A118

78.134

99.42

0.777
  pilT Acinetobacter baylyi ADP1

80.243

95.362

0.765
  pilT Legionella pneumophila strain Lp02

74.487

98.841

0.736
  pilT Legionella pneumophila strain ERS1305867

74.487

98.841

0.736
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.107

97.681

0.704
  pilT Vibrio cholerae strain A1552

72.107

97.681

0.704
  pilT Neisseria meningitidis 8013

67.733

99.71

0.675
  pilT Neisseria gonorrhoeae MS11

67.442

99.71

0.672
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.147

98.261

0.493
  pilU Pseudomonas stutzeri DSM 10701

41.691

99.42

0.414
  pilU Vibrio cholerae strain A1552

41.667

97.391

0.406
  pilU Acinetobacter baylyi ADP1

39.763

97.681

0.388