Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   F6I26_RS11030 Genome accession   NZ_CP126961
Coordinates   2142200..2143525 (-) Length   441 a.a.
NCBI ID   WP_218969789.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB4708     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2137200..2148525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS11010 (F6I26_011010) - 2138527..2141103 (+) 2577 WP_150889000.1 YfhO family protein -
  F6I26_RS11025 (F6I26_011025) comE 2141451..2142200 (-) 750 WP_024052478.1 competence system response regulator transcription factor ComE Regulator
  F6I26_RS11030 (F6I26_011030) comD/comD2 2142200..2143525 (-) 1326 WP_218969789.1 GHKL domain-containing protein Regulator
  F6I26_RS11035 (F6I26_011035) - 2143543..2143689 (-) 147 WP_003029519.1 bacteriocin -
  F6I26_RS11045 (F6I26_011045) rlmH 2143971..2144450 (-) 480 WP_024052476.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  F6I26_RS11050 (F6I26_011050) htrA 2144644..2145834 (+) 1191 WP_024052475.1 trypsin-like peptidase domain-containing protein Regulator
  F6I26_RS11055 (F6I26_011055) spo0J 2145889..2146656 (+) 768 WP_070672281.1 ParB/RepB/Spo0J family partition protein Regulator
  F6I26_RS11060 (F6I26_011060) - 2146954..2148129 (+) 1176 WP_070811584.1 IS256-like element ISSag11 family transposase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 52041.75 Da        Isoelectric Point: 8.7195

>NTDB_id=840815 F6I26_RS11030 WP_218969789.1 2142200..2143525(-) (comD/comD2) [Streptococcus anginosus strain UMB4708]
MVKIEFVHWIIFSIIEAVSVVYCYKKISRVNKVNIHFTLLCLGIVFSTDLTTLIHYSIRYMMFFIQPLFFYLYFFKVKKV
RRHLSVFLALFLSLAVSSSETFFSVIISSVTGDKFVDRYWGLFYIFINIISLIFILKAIDYFKFNFKYFKKADFKENILQ
LNFYLLFIHFLLNLSHWLSNMKNLNSFSSMIATICFLMFMSTLFYLQSIREKYEKEEQIKQKEREQLQLQKYTDEIVSLY
NEIRGFRHDYGGMLASFQSAIHTGDIKEVERIYQEVLVNANLQLRSDKYTYFDLNNVGDSALRSVMTQTLFKTRDYNIEL
TFEVKDFVKPLPIKLLDLVRMTSVLLNNAIEGAAESYQKTMNVSLVDLDTETILVIQNSRKKRPLDLEEIYQTDFSTKGE
GRGLGLSNIKEIINNYEGIILDTKIEDEYFTQVIRVRKEGL

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=840815 F6I26_RS11030 WP_218969789.1 2142200..2143525(-) (comD/comD2) [Streptococcus anginosus strain UMB4708]
ATTGTGAAAATAGAATTTGTACATTGGATTATTTTCTCAATTATAGAAGCTGTTTCTGTTGTATATTGCTATAAGAAAAT
AAGTAGAGTGAATAAAGTGAATATTCACTTTACTTTGTTGTGTTTAGGAATTGTATTTTCAACTGATTTAACTACTTTAA
TACATTATTCCATTAGATATATGATGTTTTTTATTCAACCATTATTTTTTTATTTATATTTTTTTAAAGTAAAAAAAGTT
AGAAGACATCTTTCTGTATTTTTAGCACTATTTTTATCTTTAGCTGTGTCAAGTTCTGAAACCTTCTTTTCAGTCATTAT
TTCTTCTGTTACAGGTGATAAGTTTGTTGATAGATACTGGGGATTGTTCTATATTTTTATCAATATTATTTCTTTAATTT
TTATTTTAAAAGCAATTGATTATTTTAAGTTTAATTTTAAATATTTTAAAAAGGCGGATTTCAAAGAGAATATTTTGCAG
TTAAACTTTTATCTCTTATTTATTCATTTTTTATTAAATTTATCGCATTGGCTTAGTAATATGAAAAATTTAAATAGTTT
TTCTAGTATGATTGCTACAATTTGCTTTTTAATGTTTATGTCAACTTTATTCTACTTACAATCTATTCGTGAAAAGTATG
AAAAAGAAGAACAAATTAAACAAAAAGAACGAGAACAACTACAATTACAAAAATATACAGATGAAATAGTGAGTCTGTAT
AATGAAATTCGAGGTTTTCGTCATGATTATGGAGGAATGTTGGCAAGCTTCCAATCAGCCATTCATACAGGTGATATAAA
AGAAGTAGAGCGAATTTATCAGGAAGTGCTAGTAAATGCTAATTTACAACTTCGTTCAGATAAATATACGTATTTTGATT
TAAATAATGTTGGAGATTCAGCACTTAGAAGTGTTATGACACAAACCTTATTTAAGACGCGTGACTATAATATAGAATTA
ACATTTGAAGTAAAAGATTTTGTCAAACCCTTGCCGATTAAATTGTTAGATTTGGTTAGAATGACAAGCGTCCTTTTGAA
TAATGCCATAGAAGGAGCAGCAGAAAGTTATCAAAAAACGATGAATGTTTCTTTGGTGGATTTAGATACAGAAACAATCT
TAGTTATTCAAAATTCACGTAAGAAACGACCGCTAGATTTAGAAGAGATTTACCAAACTGATTTTTCAACAAAGGGTGAA
GGACGCGGTTTAGGCTTAAGCAATATCAAAGAAATTATTAACAACTATGAAGGAATTATCCTCGATACTAAAATTGAGGA
TGAATATTTTACACAAGTAATAAGAGTAAGGAAAGAAGGTTTATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(334-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus gordonii strain NCTC7865

54.072

100

0.542
  comD/comD1 Streptococcus gordonii str. Challis substr. CH1

59.162

86.621

0.512
  comD/comD2 Streptococcus pneumoniae TIGR4

48.404

85.261

0.413
  comD Streptococcus mitis NCTC 12261

48.404

85.261

0.413
  comD Streptococcus mitis SK321

48.138

85.261

0.41
  comD/comD1 Streptococcus pneumoniae Rx1

47.872

85.261

0.408
  comD/comD1 Streptococcus pneumoniae D39

47.872

85.261

0.408
  comD/comD1 Streptococcus pneumoniae R6

47.872

85.261

0.408