Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   F6I26_RS01880 Genome accession   NZ_CP126961
Coordinates   349061..351019 (+) Length   652 a.a.
NCBI ID   WP_024052151.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB4708     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 344061..356019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS01865 (F6I26_001865) ftsL 344973..345293 (+) 321 WP_024052154.1 cell division protein FtsL -
  F6I26_RS01870 (F6I26_001870) pbp2X 345297..347552 (+) 2256 WP_024052153.1 penicillin-binding protein PBP2X -
  F6I26_RS01875 (F6I26_001875) mraY 347554..348537 (+) 984 WP_024052152.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  F6I26_RS01880 (F6I26_001880) amiA3 349061..351019 (+) 1959 WP_024052151.1 peptide ABC transporter substrate-binding protein Regulator
  F6I26_RS01890 (F6I26_001890) - 351489..352370 (+) 882 WP_003025917.1 class II fructose-bisphosphate aldolase -
  F6I26_RS01900 (F6I26_001900) - 352813..353259 (+) 447 WP_024052149.1 LytTR family DNA-binding domain-containing protein -
  F6I26_RS01905 (F6I26_001905) - 353265..353927 (+) 663 WP_024052148.1 hypothetical protein -
  F6I26_RS01910 (F6I26_001910) rpmB 354062..354250 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  F6I26_RS01915 (F6I26_001915) - 354425..354790 (+) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72378.61 Da        Isoelectric Point: 7.4268

>NTDB_id=840771 F6I26_RS01880 WP_024052151.1 349061..351019(+) (amiA3) [Streptococcus anginosus strain UMB4708]
MKSSKWIIATGVVLSAGILLSGCGKSASSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDQYGNLVPALAK
SWTVSKDGLTYTYKLHKDAKWYTSEGEEYASVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLSRAETYWNSKTTNNILFPVNADFLKSQGKKFGSVKPTSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKAATQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLAD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGTENVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNIKNGGSLQNFGLEPGQENDKIKAVGLDTYTEMLAEANAETNEATRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGASSSYFKYVKLQDKIVTTKEYESAKKKWLKEKETSN
KKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=840771 F6I26_RS01880 WP_024052151.1 349061..351019(+) (amiA3) [Streptococcus anginosus strain UMB4708]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGCGCTGGAATCCTATTATCAGGTTGTGGCAAGTCAGC
TTCTAGCACATCAACTTATTCATACGTGTATACACAAGATCCAGACACGCTAAATTATCTGATGGCGAATCGTGCGACAA
CTTCAGATGTTGTGACTAACTTAGTTGATGGATTATTGGAAAATGACCAGTACGGAAATTTAGTTCCGGCGCTTGCTAAG
TCATGGACAGTCTCCAAAGATGGCTTGACATATACGTATAAATTACATAAAGATGCTAAATGGTACACATCAGAAGGTGA
AGAGTACGCAAGTGTAAAAGCGCAAGACTTTGTAACTGGCTTGAAATACGCCGCAGATAATAAATCAGAAGCCCTTTACC
TCGTTCAAGATTCTGTCAAAGGTTTAGATGCTTACATCAAGGGTGAAACGAAAGATTTTTCAACGGTTGGAGTAAAAGCT
CTAGATGACTATACAGTACAGTATACACTCAGCCGTGCAGAGACTTATTGGAATTCAAAAACGACCAATAATATCCTCTT
CCCAGTTAATGCAGATTTCTTGAAATCACAAGGAAAAAAATTTGGTTCTGTAAAACCAACCAGCATTCTATACAATGGTC
CTTATCTATTGAAGTCTCTGACAGCCAAGTCTTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CATTTGGATAACATTAAATTGACATATTATGACGGCTCTGACCAAGAAGCCCTTATCCGTAACTTCACAGATGGTGCCTA
TAGTGCAGCTCGTCTTTATCCAAATAGCTCTAGTTTTGCTTCTGTTAAGAAACAATATGCTAACAATATCATCTATAGTT
TGCAAGATGCGACCAGCTACTATTATAACTTTAATTTAAATCGTCAGTCCTATAACCATACATCGAAGAAAACAGATGCT
CAAAAGGCTGCGACCCAAGAAGCGGTGCTAAATAAAGCTTTCCGTCAAGCTATCAATTTTGCCTATAATCGTACTTCTTA
TGGTGCACAAAGTAATGGGAAAGACGGAGCGACAAAGGTATTGCGGAACACACTCGTGCCACCAACATTTGTTTCTATCG
GTGATAAAACGTTTGGTGATGTTGTGTCTTCTAAGCTGGTAAACTATGGCTCAGAATGGTCAAACATGAATTTGGCCGAT
GCACAAGATGCTTATTACAATCCAGAAAAAGCTAAAGCAAAGTTTGCTCAAGCTAAAGCAGAACTGCAAGCAAAGGGTGT
TCAGTTTCCTATCCACTTAGATGTACCAGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCCATGAAACAAT
CTGTTGAGTCTGTCTTAGGCACAGAAAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTAAATAATATCAGT
TATTTTGCTAATACAGCTGCTCAAAAGGACTATGATTTGTATAATGGTGGTTGGTCTGGTGACTATCAAGACCCATCTAC
TTATCTAGATACTTTGAATATAAAAAATGGTGGTAGTTTACAAAACTTTGGTCTGGAACCAGGTCAAGAAAATGATAAGA
TCAAGGCAGTTGGACTGGACACATATACAGAGATGCTAGCAGAAGCAAATGCTGAAACCAACGAAGCTACACGCTATGAA
AAATATGCCGAGGCGCAAGCATGGTTAATTGATAGTGGCTTGACAATGCCAAACCTCTCTCTTGGAGGAACACCATCTGT
GACGAAAACAGTTCCATTTAGCCGTTCTTATTCATTAGTTGGAATCAAAGGTGCTTCAAGCAGTTATTTCAAATATGTCA
AACTGCAAGACAAAATTGTAACAACAAAAGAATACGAAAGTGCTAAAAAGAAATGGCTAAAAGAAAAAGAAACCTCTAAT
AAAAAAGCGCAAGATGACTACGAAAATCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

57.23

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

57.078

100

0.575
  amiA Streptococcus salivarius strain HSISS4

57.078

100

0.575