Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VR625_RS07225 Genome accession   NZ_CP142147
Coordinates   1558222..1560351 (-) Length   709 a.a.
NCBI ID   WP_109166255.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1553222..1565351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS07210 - 1554078..1555097 (-) 1020 WP_109166258.1 TerC family protein -
  VR625_RS07215 - 1555340..1557355 (-) 2016 WP_345981876.1 TerD family protein -
  VR625_RS07220 - 1557475..1558053 (-) 579 WP_109166256.1 TerD family protein -
  VR625_RS07225 uvrB 1558222..1560351 (-) 2130 WP_109166255.1 excinuclease ABC subunit UvrB Machinery gene
  VR625_RS07230 - 1560441..1561088 (-) 648 WP_161032436.1 MHYT domain-containing protein -
  VR625_RS07235 - 1561325..1562215 (+) 891 WP_109166253.1 glycerophosphodiester phosphodiesterase family protein -
  VR625_RS07240 - 1562300..1562857 (+) 558 WP_109167565.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  VR625_RS07245 - 1562978..1564258 (+) 1281 WP_109166252.1 MFS transporter -
  VR625_RS07250 - 1564307..1564669 (-) 363 WP_109166251.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79934.75 Da        Isoelectric Point: 4.8601

>NTDB_id=839934 VR625_RS07225 WP_109166255.1 1558222..1560351(-) (uvrB) [Streptomyces sp. DSS69]
MRPVSKIERSVAPFEVVSPYQPSGDQPAAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGEETDRDQLLRRFVEMQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDQSLYVFPASHYVAGPERLERAVRGIEEELQERLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDERAPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSAMDNRPLKWEEFLKRIDQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEIVVKPTEGQIDDLVHEIRKRTERDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMAQAIDETNRRREKQIAYNTERGLDPQPLRKKINDIVATIAREEIDTEELLGTGYRQGKEARTPVPTLGVKAA
KGGAKGRGASPGAVVSDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMKEAGLA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=839934 VR625_RS07225 WP_109166255.1 1558222..1560351(-) (uvrB) [Streptomyces sp. DSS69]
ATGCGGCCCGTTTCCAAGATCGAACGTTCGGTGGCGCCCTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGAGCGGCGTATCCGCGCAGGTGAGAAGGATGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTGCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTCGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTCCTGCCGAACAACGCGGTGGAGTATTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTGGAGCGGCTGCGCCATT
CGGCGACCAACTCGCTGCTCACCCGGCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGTACGCCC
CAGGAGTACGTGGACCGCATGGTCCAGCTCAAGGTCGGCGAGGAGACCGACCGCGACCAGCTGCTGCGCCGGTTCGTGGA
GATGCAGTACACGCGCAACGACCTCGCCTTCACCCGCGGCACCTTCCGGGTCCGGGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTGCACCCGCTGACCGGC
GAGGTGATCAGCGAGGACCAGTCGCTGTACGTCTTCCCCGCCAGCCACTACGTGGCAGGACCCGAGCGGCTGGAGCGGGC
CGTCCGGGGCATCGAGGAGGAGCTCCAGGAGCGGCTGGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCAGCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGAGCGCGCACCCGGCACCGCGCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTGCTCGTTCTCGACGA
GTCCCATGTCACCGTCCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCGATGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCTGAAGCGGATCGACCAGACGGTCTACCTC
TCCGCCACCCCGGGGAAGTACGAGCTGTCGCGCGGCGACGGCTTCGTGGAGCAGATCATCCGTCCCACCGGCCTGGTCGA
CCCCGAGATCGTGGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGCGGGACG
AGCGGGTCCTGGTCACCACGCTCACCAAGAAGATGTCGGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCCAGGTC
AGGTATCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGTTGCTGCGCGAGCTGCGCTCCGGTGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCCGTGAGGGCCTCGACCTTCCCGAGGTCTCCCTCGTGGCCATCCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCGGGCACCTCCCTCATCCAGACCATCGGACGCGCCGCCCGAAACGTCTCCGGCCAGGTCCATATGTAC
GCGGACAAGGTGACCCCGGCGATGGCGCAGGCCATCGACGAGACCAACCGCCGCCGTGAGAAGCAGATCGCCTACAACAC
CGAGCGCGGACTCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGACCATCGCCCGCGAGGAGATCGACA
CCGAGGAGCTCCTCGGCACCGGCTACCGCCAGGGCAAGGAGGCCAGGACCCCCGTACCCACGCTCGGGGTGAAGGCGGCC
AAGGGCGGTGCCAAGGGCCGGGGGGCGTCGCCCGGCGCGGTCGTCAGCGACCGACCCGCGACCGAACTGGCCGGAATCAT
CGAGGAGATGACCGACCGGATGCGGGCCGCCGCCGCCGACCTGCAGTTCGAGGTGGCCGCGCGGCTGCGTGACGAGGTGG
GCGAGTTGAAGAAGGAGCTGCGCCAGATGAAGGAGGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB/uvrC motif (UVR)

(667-699)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB interaction domain (UvrB_inter)

(168-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.523

97.038

0.539
  uvrB Streptococcus pneumoniae R6

55.523

97.038

0.539
  uvrB Streptococcus pneumoniae D39

55.523

97.038

0.539