Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   VRA41_RS07960 Genome accession   NZ_CP142105
Coordinates   1533721..1535739 (-) Length   672 a.a.
NCBI ID   WP_011227535.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SCB0351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528721..1540739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS07940 (VRA41_07940) - 1529202..1529342 (-) 141 WP_167540730.1 hypothetical protein -
  VRA41_RS07945 (VRA41_07945) - 1529387..1530410 (-) 1024 Protein_1523 DUF6574 domain-containing protein -
  VRA41_RS07950 (VRA41_07950) - 1530528..1531913 (-) 1386 WP_011226527.1 Cof-type HAD-IIB family hydrolase -
  VRA41_RS07955 (VRA41_07955) - 1531987..1532952 (+) 966 WP_041827163.1 asparaginase -
  VRA41_RS07960 (VRA41_07960) recG/mmsA 1533721..1535739 (-) 2019 WP_011227535.1 ATP-dependent DNA helicase RecG Machinery gene
  VRA41_RS07965 (VRA41_07965) alr 1535868..1536971 (-) 1104 WP_011227536.1 alanine racemase -
  VRA41_RS07970 (VRA41_07970) acpS 1536992..1537351 (-) 360 WP_002951878.1 holo-ACP synthase -
  VRA41_RS07975 (VRA41_07975) - 1537355..1538386 (-) 1032 WP_011227537.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75609.12 Da        Isoelectric Point: 6.2978

>NTDB_id=839897 VRA41_RS07960 WP_011227535.1 1533721..1535739(-) (recG/mmsA) [Streptococcus thermophilus strain SCB0351]
MIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAINFFNQPYLVDKFEVGAEVAIFGKWDRKKSAVTGMKVLAHVEDDMQPVYHVAQGVSQAQLIKAIKVAF
DSGALNLLEESLPQVLMDKYRLMGRQEAVRVMHFPKDLAEYKQALRRIKFEELFYFQMNLQVLKAENKSETNGLAISYDE
VKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQ
SLKGLFPELKVVLLTSGMKMADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDAQVYFISPLIEESESLDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADTVEDYNILEEAR
RVASQIVSDPNWRENPDWQVLEAHLRNQDEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=839897 VRA41_RS07960 WP_011227535.1 1533721..1535739(-) (recG/mmsA) [Streptococcus thermophilus strain SCB0351]
ATGATTCAACTAGATTCACCAATTGCAGATTTGAAGGGCTTTGGTCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ACACACAGTTGGGGACCTCTTGCTTTATTTTCCTTTTCGATATGAAGATTTTAAGAGTAAGTCCATCTTTGAACTGATGG
ATGGAGAAAAGGCCGTCATTACAGGAACAGTGGTAACACCGGCCAATGTGCAGTATTATGGCTTTAAACGTAATCGTCTT
AGCTTTAAAATAAAGCAGGGTGAGGCTGTGATTGCCATTAATTTCTTTAATCAGCCTTATCTTGTGGACAAGTTTGAGGT
GGGGGCAGAAGTGGCTATCTTTGGCAAGTGGGACCGTAAGAAGTCTGCAGTGACTGGTATGAAAGTCTTGGCTCATGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCTCAGGGTGTTAGTCAGGCCCAGCTGATAAAGGCTATAAAGGTAGCTTTT
GACAGTGGCGCCCTTAATTTGTTGGAGGAAAGTCTCCCCCAAGTGCTGATGGACAAGTATCGTCTCATGGGACGTCAAGA
GGCTGTGCGTGTCATGCATTTTCCTAAAGATTTGGCTGAATATAAGCAGGCCCTACGTAGGATTAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTAAAGGCTGAGAATAAATCAGAGACCAATGGACTAGCGATTTCTTACGATGAG
GTAAAAATAAAAGCCAAGATTGCTACCCTTCCTTTCCCTCTGACCAAAGCCCAGGAGCGCAGTTTATCAGAAATCCTAGC
TGATATGAAATCTGGGGCTCACATGAACCGTCTCTTGCAGGGAGACGTGGGCTCAGGAAAGACAGTTATTGCTAGTCTTG
CCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTTATGGTGCCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTGAAGGGACTTTTTCCTGAGCTAAAGGTAGTCCTCTTAACTTCTGGGATGAAGATGGCAGATAAGAAAGTAGCTCT
TTCTAAAATTGAGTCTGGGGAGGCTCAAATGATTGTGGGAACTCACTCACTGATTCAGGATGCGGTGATTTATCATAAAC
TTGGGTTGGTGATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGAGAGAAGGGAGACAATCCT
GATGTCCTCATGATGACAGCAACACCCATTCCTAGGACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTGTCAATCAT
TGATCAGATGCCGGCTGGACGTAAGACTATTATTACCCGTTGGGTTAAACATGAGCAACTAGACACCGTATTGACTTGGA
TTAAGAGTGAGTTAGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTTTGATTGAAGAGTCTGAGTCTCTTGATTTGAAA
AATGCTGTTGCCCTTCATCAGGAACTCACAGAGTTTTTTGGAGATTCAGCTACGGTGGCTCTGATGCATGGTCGGATGAA
AAATGATGAAAAAGACCAAATTATGCAGGATTTTAAGGACAAAAAATCTCAGATTTTAGTATCAACCACAGTTATTGAAG
TTGGAGTTAACGTACCTAATGCTACGGTTATGGTTATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGCCGTGTAGGGCGTGGAGACAAGCAGTCTTACTGTGTCTTGGTGGCTAATCCTAAAAATGATACCGGTAAAAAACG
CATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTTTAGCAGAAGAGGACCTTAAAATGCGTGGCTCAGGAGAGATTT
TCGGGACGCGGCAGTCAGGCATTCCTGAATTTCAGGTGGCTGATACTGTGGAAGACTATAATATCCTAGAAGAAGCAAGG
CGCGTGGCCAGTCAAATTGTTTCTGACCCTAACTGGCGTGAGAATCCTGATTGGCAGGTGCTAGAAGCTCATTTGAGAAA
CCAAGATGAGTTTGACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(255-412)

Helicase conserved C-terminal domain (Helicase_C)

(457-567)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

RecG wedge domain (RecG_wedge)

(11-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.939

99.851

0.708
  recG/mmsA Streptococcus pneumoniae R36A

70.939

99.851

0.708
  recG Bacillus subtilis subsp. subtilis str. 168

50

99.107

0.496
  recG Neisseria meningitidis strain C311

39.079

100

0.391