Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VP467_RS04565 Genome accession   NZ_CP142102
Coordinates   962973..964994 (+) Length   673 a.a.
NCBI ID   WP_001004983.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain C20AB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957973..969994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP467_RS04540 (VP467_04540) - 958277..958687 (+) 411 WP_001014249.1 GFA family protein -
  VP467_RS04545 (VP467_04545) - 958740..959975 (-) 1236 WP_000383200.1 pyridoxal phosphate-dependent aminotransferase -
  VP467_RS04550 (VP467_04550) - 960183..960362 (+) 180 WP_000139632.1 hypothetical protein -
  VP467_RS04555 (VP467_04555) - 960397..961833 (-) 1437 WP_000448850.1 diguanylate cyclase domain-containing protein -
  VP467_RS04560 (VP467_04560) - 962002..962793 (-) 792 WP_000222200.1 hypothetical protein -
  VP467_RS04565 (VP467_04565) uvrB 962973..964994 (+) 2022 WP_001004983.1 excinuclease ABC subunit UvrB Machinery gene
  VP467_RS04570 (VP467_04570) - 965088..965675 (+) 588 WP_000885644.1 lipocalin family protein -
  VP467_RS04575 (VP467_04575) rarD 965784..966731 (+) 948 WP_014466252.1 EamA family transporter RarD -
  VP467_RS04580 (VP467_04580) - 966948..968405 (+) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  VP467_RS04585 (VP467_04585) - 968555..969289 (+) 735 WP_001183836.1 hypothetical protein -
  VP467_RS04590 (VP467_04590) - 969301..969975 (+) 675 WP_000468065.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77278.03 Da        Isoelectric Point: 5.3381

>NTDB_id=839770 VP467_RS04565 WP_001004983.1 962973..964994(+) (uvrB) [Acinetobacter baumannii strain C20AB01]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=839770 VP467_RS04565 WP_001004983.1 962973..964994(+) (uvrB) [Acinetobacter baumannii strain C20AB01]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGCCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTCAAA
GCCTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCATC
AGATACATTTATTGAAAAAGACGCAGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGATCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTTACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGTGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGATAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGGTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGTGAAGCACCACCGACTTTATTTGACTATGTACCAGAAGATGCCTTACTTATTATTGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCAACGACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCAGTGCTTACCCAAGTCGATGATGTTTTGTCTGAAATTAATATTCGTAAGAACTTAAATGAGCGTGTGTTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCTTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGTCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCGCAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae R6

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae D39

57.997

99.406

0.577