Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMY06_RS09750 Genome accession   NZ_CP126697
Coordinates   1993174..1993695 (-) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus acidilactici strain F1493     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1988174..1998695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY06_RS09730 (QMY06_09730) dnaB 1988794..1990191 (-) 1398 WP_002829312.1 replicative DNA helicase -
  QMY06_RS09735 (QMY06_09735) rplI 1990241..1990693 (-) 453 WP_002830768.1 50S ribosomal protein L9 -
  QMY06_RS09740 (QMY06_09740) - 1990699..1992696 (-) 1998 WP_024862775.1 DHH family phosphoesterase -
  QMY06_RS09745 (QMY06_09745) rpsR 1992908..1993144 (-) 237 WP_002829315.1 30S ribosomal protein S18 -
  QMY06_RS09750 (QMY06_09750) ssb 1993174..1993695 (-) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  QMY06_RS09755 (QMY06_09755) rpsF 1993732..1994019 (-) 288 WP_002829317.1 30S ribosomal protein S6 -
  QMY06_RS09760 (QMY06_09760) gyrA 1994205..1996724 (-) 2520 WP_128688563.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=839629 QMY06_RS09750 WP_002829316.1 1993174..1993695(-) (ssb) [Pediococcus acidilactici strain F1493]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=839629 QMY06_RS09750 WP_002829316.1 1993174..1993695(-) (ssb) [Pediococcus acidilactici strain F1493]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGCGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGTAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAACGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376