Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   JN167_RS02455 Genome accession   NZ_AP024201
Coordinates   534444..535013 (+) Length   189 a.a.
NCBI ID   WP_047526087.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain Tokyo13069     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 529444..540013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN167_RS02430 (TMSFP069_04610) cysE 530657..531304 (+) 648 WP_202257258.1 serine O-acetyltransferase -
  JN167_RS02435 (TMSFP069_04620) cysS 531288..532688 (+) 1401 WP_047526085.1 cysteine--tRNA ligase -
  JN167_RS02440 (TMSFP069_04630) - 532681..533085 (+) 405 WP_047526086.1 Mini-ribonuclease 3 -
  JN167_RS02445 (TMSFP069_04640) rlmB 533093..533839 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JN167_RS02450 (TMSFP069_04650) - 533839..534363 (+) 525 WP_000664733.1 NYN domain-containing protein -
  JN167_RS02455 (TMSFP069_04660) sigH 534444..535013 (+) 570 WP_047526087.1 sigma-70 family RNA polymerase sigma factor Regulator
  JN167_RS02460 rpmG 535129..535272 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  JN167_RS02465 (TMSFP069_04670) secE 535328..535510 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  JN167_RS02470 (TMSFP069_04680) nusG 535523..536071 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  JN167_RS02475 (TMSFP069_04690) rplK 536252..536674 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  JN167_RS02480 (TMSFP069_04700) rplA 536882..537574 (+) 693 WP_001074615.1 50S ribosomal protein L1 -
  JN167_RS02485 (TMSFP069_04710) rplJ 537846..538346 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  JN167_RS02490 (TMSFP069_04720) rplL 538390..538758 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  JN167_RS02495 (TMSFP069_04730) - 538946..539554 (+) 609 WP_000020309.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23004.94 Da        Isoelectric Point: 9.4799

>NTDB_id=83956 JN167_RS02455 WP_047526087.1 534444..535013(+) (sigH) [Staphylococcus argenteus strain Tokyo13069]
MKRCISVHNNVEKHSNIVDDNEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFTGEQPFVNYVQC
LITSVKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREI
AQLMNVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=83956 JN167_RS02455 WP_047526087.1 534444..535013(+) (sigH) [Staphylococcus argenteus strain Tokyo13069]
TTGAAAAGATGTATATCAGTGCATAATAATGTTGAAAAACACAGCAATATAGTTGACGATAATGAATTTGAAAAGTTAAT
AACAGATTTGAAACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAG
AGATACTAATAAAGATATATAGGGCAACTAAAACATTCGATTTTACAGGTGAGCAACCATTCGTGAATTATGTTCAATGT
TTAATCACTTCAGTTAAATACGATTATCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATA
TAAAGTTATATATCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGA
TTTGTCAATTTAAATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCGAGAGAGATT
GCCCAATTGATGAATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAA
AATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.149

99.471

0.688
  sigH Staphylococcus aureus MW2

68.085

99.471

0.677

Multiple sequence alignment