Detailed information NTG0839455

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QOM10_RS25080
• Genome accession: NZ_CP126691
• Coordinates: 5691458..5692804 (+)
• Length: 448 a.a.
• NCBI ID: WP_127929828.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P108
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5686458..5697804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM10_RS25055 (QOM10_25045)	pgeF	5686664..5687386 (-)	723	WP_316917126.1	peptidoglycan editing factor PgeF	-
QOM10_RS25060 (QOM10_25050)	rluD	5687383..5688345 (-)	963	WP_016986220.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QOM10_RS25065 (QOM10_25055)	-	5688497..5689513 (+)	1017	WP_316917127.1	outer membrane protein assembly factor BamD	-
QOM10_RS25070 (QOM10_25060)	-	5689640..5689882 (+)	243	WP_127929827.1	PP0621 family protein	-
QOM10_RS25075 (QOM10_25065)	pilS	5689872..5691461 (+)	1590	WP_316918398.1	sensor histidine kinase	Regulator
QOM10_RS25080 (QOM10_25070)	pilR	5691458..5692804 (+)	1347	WP_127929828.1	sigma-54-dependent transcriptional regulator	Regulator
QOM10_RS25085 (QOM10_25075)	thiO	5692921..5694021 (-)	1101	WP_127929829.1	glycine oxidase ThiO	-
QOM10_RS25090 (QOM10_25080)	-	5694079..5694480 (-)	402	WP_038361678.1	type IV pilin protein	-
QOM10_RS25095 (QOM10_25085)	-	5694496..5697585 (-)	3090	WP_160041878.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50095.33 Da
• Isoelectric Point: 6.5960

>NTDB_id=839455 QOM10_RS25080 WP_127929828.1 5691458..5692804(+) (pilR) [Pseudomonas sp. P108]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLTEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSSTSIDRRLLGDSAPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=839455 QOM10_RS25080 WP_127929828.1 5691458..5692804(+) (pilR) [Pseudomonas sp. P108]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCTTGGG
ACGGATGAAACTCGACACCTACAGCGCGCGCAATCTGACTGAAGCCCAGGCGCTGTTGCATCGCGAAACATTCGACCTGT
GCCTGACCGACATGCGTCTGCCCGACGGCACGGGACTGGAACTGGTGCAGCACATTCAGCAGCGTTATCCACAACTGCCA
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCCTTGAAAGCAGGCGCATTCGACTTTCTTACCAA
ACCAGTGGACCTCACTCGCTTGCGCGAGCTGGTCGGCACGGCACTACGCATGCCGGCGGCGGGCGGCAGCTCTACCTCGA
TTGATCGACGCTTGCTCGGCGATTCAGCACCGATGCGCAACCTGCGCAAACAGATCGACAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGTAAAGAACTGGTCGCGCGACTGATCCACGAACAGGGGCCGCGCGCCAG
CCAGCCGTTCGTACCGGTGAACTGCGGGGCGATTCCCTCGGAGCTGATGGAAAGCGAGTTTTTTGGTCATCGCAAAGGCA
GTTTCACCGGCGCAGTCGAGGACAAACCCGGGCTGTTTCAGGCGGCCCATGGCGGCACGTTGTTTCTCGATGAAGTGGCG
GATTTGCCGCTGTCGATGCAGGTGAAGTTACTGCGCGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTTTGCGCCACCCACAAGGATCTCGATGCAGAGGTCGCGGCCGAGCGTTTTCGTCAGG
ACCTTTATTACCGCCTGAACGTGATTGAATTGCGCGTGCCGTCGCTGCGTGAGCGCCGTGATGACATTGAAGTGCTGGCG
GCACATATGCTCAAGCGTTTGGCCAAGGACACCGGCCAACCGGCAGCACGCTTGCATCCGCAGGCGTTGGAAGCGCTGAA
GAACTACCGCTTTCCAGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGAGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCTGAAGATTTACGTTTGAGTGAAGGCAACTGCGCGGCGGATGGTGGGATTGCCGATCTGACCCAGATCGATAAT
CTTGAGGATTATCTGGAGAACGTTGAGCGGAAGCTGATTTTGCAGGCGCTGGAGGAGACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCAGATCGATGCGCTACAGACTGAAGAAATTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.91	98.884	0.79
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5