Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QOM10_RS25075 Genome accession   NZ_CP126691
Coordinates   5689872..5691461 (+) Length   529 a.a.
NCBI ID   WP_316918398.1    Uniprot ID   -
Organism   Pseudomonas sp. P108     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5684872..5696461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM10_RS25055 (QOM10_25045) pgeF 5686664..5687386 (-) 723 WP_316917126.1 peptidoglycan editing factor PgeF -
  QOM10_RS25060 (QOM10_25050) rluD 5687383..5688345 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QOM10_RS25065 (QOM10_25055) - 5688497..5689513 (+) 1017 WP_316917127.1 outer membrane protein assembly factor BamD -
  QOM10_RS25070 (QOM10_25060) - 5689640..5689882 (+) 243 WP_127929827.1 PP0621 family protein -
  QOM10_RS25075 (QOM10_25065) pilS 5689872..5691461 (+) 1590 WP_316918398.1 sensor histidine kinase Regulator
  QOM10_RS25080 (QOM10_25070) pilR 5691458..5692804 (+) 1347 WP_127929828.1 sigma-54-dependent transcriptional regulator Regulator
  QOM10_RS25085 (QOM10_25075) thiO 5692921..5694021 (-) 1101 WP_127929829.1 glycine oxidase ThiO -
  QOM10_RS25090 (QOM10_25080) - 5694079..5694480 (-) 402 WP_038361678.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58464.91 Da        Isoelectric Point: 6.3898

>NTDB_id=839454 QOM10_RS25075 WP_316918398.1 5689872..5691461(+) (pilS) [Pseudomonas sp. P108]
MIAEATHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGVFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLSFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQSHLQGHLID
DYSSALVDRLQLWMNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQAGER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLALFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=839454 QOM10_RS25075 WP_316918398.1 5689872..5691461(+) (pilS) [Pseudomonas sp. P108]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCTCAGCGCCTGCTGCGCCTTTATCATCTTTACCGTTTAAGCGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAACTGCTGCGCG
GCGGCAGCTGGCTGTATCTGATCCTCAACATCTTGCTGGTAGTGTTCCTTGAGAACACCCGACGGCCGGCGCAGCTGTTC
AGCCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTGTGTTCTTTGCGGCAGGCGGTGTTGGCAGTGCGCTGGGCAATTT
GCTGATTGTCTCGGTGGCGATCAGCAACACCTTGCTACGCCGACGCATCGGCCTGTTGATCGCCGCCATCGGCGCGCTGG
GCATCGTCGGTTCGAGTTTCCTGCTGAGCTTCAACCATCCCCTGAGCGCCAATGAATACCTGCAAGCCGGCACCCTTGGC
GCCCTGTGCTTTGCCGCCTCGTTGTTGGTGCAGGGACTGATCCGGCGCCTGGAGGTCAGCGAAACATTGGCCGAACAGCG
CGCCAGTGAAGTGGTCGGGCTCGAAGCGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATTCTGGTCCTCGACG
AGGAGCGCCGGGTGCAACTGGCGAACCACAGCGCACAAACCCTGCTCGCGCAATCTCACCTTCAGGGACATTTGATCGAC
GACTATTCCAGTGCGCTGGTCGATCGCCTGCAACTGTGGATGAACAACCCGACCTTGCGCCCGCAAAGCCTGAAAATCCC
CGGCAACGGCCTCGAACTGCAACCGAGCTTCATTGCCCTCGAGCAAAGTCCCAACCAGCAAACCCTGGTGTTTCTCGAAG
ACCTTGCGCAAATCGCCCAGCAGGCCCAGCAATTGAAACTGGCCGCGCTCGGGCGCTTGACCGCCGGGATCTCCCACGAG
ATCCGCAATCCGCTGGGTGCCATCAGTCACGCTGCACAGCTATTGGGGGAGTCCGAGGAACTCGACAGCGCCGATCGGCG
TCTGACGCAGATCATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGGCGCCAAC
AGAGCGCGCCGCAACGACTGGATCTCAAGCCGTGGCTGGAGAATTTCGTTGCCGAAAGCCGCGAACAGGCGGGCGAGCGC
CAGCAGATTCATCTGCGGATCAATTCAGGGGACTTCACCACGCTGATGGACCCCAATCAGCTCACGCAGATTCTCGACAA
TCTGTTGCGCAATGGCTGGCGCCACAGCGCCCTGCTGCACGATCAAGCCGAAGTCTGGCTGGCCCTGTTCAGCGATCCCG
ACAGCCAATTGGCGGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595