Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VJY30_RS06465 Genome accession   NZ_CP142035
Coordinates   1323030..1323767 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain HS4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318030..1328767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJY30_RS06435 (VJY30_06435) yfiL 1318188..1318553 (-) 366 WP_001353010.1 DUF2799 domain-containing protein -
  VJY30_RS06440 (VJY30_06440) aroF 1318763..1319833 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VJY30_RS06445 (VJY30_06445) tyrA 1319844..1320965 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VJY30_RS06450 (VJY30_06450) pheA 1321008..1322168 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  VJY30_RS06455 (VJY30_06455) pheL 1322267..1322314 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  VJY30_RS06460 (VJY30_06460) raiA 1322418..1322759 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VJY30_RS06465 (VJY30_06465) comL 1323030..1323767 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VJY30_RS06470 (VJY30_06470) rluD 1323902..1324882 (+) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VJY30_RS06475 (VJY30_06475) yfiH 1324879..1325610 (+) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  VJY30_RS06480 (VJY30_06480) clpC 1325740..1328313 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=839449 VJY30_RS06465 WP_000197686.1 1323030..1323767(-) (comL) [Escherichia coli strain HS4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=839449 VJY30_RS06465 WP_000197686.1 1323030..1323767(-) (comL) [Escherichia coli strain HS4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376