Detailed information NTG0839447

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QOM10_RS21595
• Genome accession: NZ_CP126691
• Coordinates: 4917955..4920189 (-)
• Length: 744 a.a.
• NCBI ID: WP_160041422.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P108
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4912955..4925189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM10_RS21560 (QOM10_21545)	murB	4913336..4914355 (-)	1020	WP_127929341.1	UDP-N-acetylmuramate dehydrogenase	-
QOM10_RS21565 (QOM10_21550)	-	4914352..4914816 (-)	465	WP_127929342.1	low molecular weight protein-tyrosine-phosphatase	-
QOM10_RS21570 (QOM10_21555)	kdsB	4914816..4915580 (-)	765	WP_127929343.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QOM10_RS21575 (QOM10_21560)	-	4915577..4915762 (-)	186	WP_003174668.1	Trm112 family protein	-
QOM10_RS21580 (QOM10_21565)	lpxK	4915784..4916794 (-)	1011	WP_150750552.1	tetraacyldisaccharide 4'-kinase	-
QOM10_RS21585 (QOM10_21570)	-	4916794..4917222 (-)	429	WP_127929345.1	ExbD/TolR family protein	-
QOM10_RS21590 (QOM10_21575)	exbB	4917219..4917854 (-)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QOM10_RS21595 (QOM10_21580)	comA	4917955..4920189 (-)	2235	WP_160041422.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QOM10_RS21600 (QOM10_21585)	-	4920326..4920844 (+)	519	WP_007908202.1	DUF2062 domain-containing protein	-
QOM10_RS21605 (QOM10_21590)	-	4920988..4921767 (-)	780	WP_008087860.1	ABC transporter permease	-
QOM10_RS21610 (QOM10_21595)	-	4921764..4922696 (-)	933	WP_127929347.1	ABC transporter ATP-binding protein	-
QOM10_RS21615 (QOM10_21600)	-	4922820..4923443 (-)	624	WP_127929348.1	glutathione S-transferase family protein	-
QOM10_RS21620 (QOM10_21605)	-	4923487..4924146 (-)	660	WP_316916919.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81690.95 Da
• Isoelectric Point: 10.0481

>NTDB_id=839447 QOM10_RS21595 WP_160041422.1 4917955..4920189(-) (comA) [Pseudomonas sp. P108]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVTALMLLPFRSYPLAIFLLGFTWASVGAQWALNDRLPAELDGETRWLEG
RVVGLPQNGDGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLAVDAHGRAGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYWL
VAGLARFGLWPLRWPWLPWACGLAFTAALGYALLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTMLLPIPCVGEGLLWLAGGLIDGLFRALAIMAGHWPAWIAPSIPAWFLAAGGLGAVLLLLPRGVPMRPLGWPLLLLLV
VPPRERLDEGLADIWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALRKLRVEKLDLMLLSHADADHAGGA
LAITRGLTVDRVISGDPPGLPEALSAEACESGRQWQWDGVAFQLWQWADARDSNQRSCVLQIEANGERLLLTGDIDTHAE
RALLDSPLAVPTPWLQSPHHGSRSSSSMALLKVLQPAAVLISRGQGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIQVQL
GTFAPPRTMRHQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=839447 QOM10_RS21595 WP_160041422.1 4917955..4920189(-) (comA) [Pseudomonas sp. P108]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTGACGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCGATTTTTCTGCTGGGTTTCACCT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGCTTGCCGGCCGAACTGGATGGCGAAACCCGCTGGCTCGAAGGG
CGGGTGGTCGGGTTGCCGCAGAACGGCGACGGTGTGGTGCGTTTCGAGTTGGCTGATGCACGCTCACGTCACGAAAAACT
GCCATCGCTGATGCGCCTCGCCTGGTACGCCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGCTTGGCGGTCAAGCTCA
AGCGTCCCGGTGGTTTGCTCAACCCGGACGCTTTCGATTACGAGGCATGGCTGCTGGCGCAACGCATCGGTGCGACGGGC
ACAATCAAGGATGGTCAACGCCTGAGCGAAGCGCGTTGGGCCTGGCGCGACAGCATTCGTCAGCGCCTGCTTGCAGTGGA
TGCGCACGGTCGGGCCGGTGCTCTGGCCGCGTTGGTGTTGGGTGATGGGTCCGGGCTCAGTCGCGAGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGTCAGCATATCGGCTTGCTGGCGGCGGTGATGTATTGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCGCTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTTACGGC
GGCGCTGGGTTACGCCTTGCTTGCCGGATTTGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGCCTGGTACTGTTGT
GGCGTTTGCGCTTTCGCCATCTGGGGGCATGGTGGCCGCTGCTGCTGGCGTTCAATGGTGTGCTGTTGCTGGATCCGCTC
GCGAGTTTGCGTCCGGGTTTGTGGTTGTCGTTTGCGGCGGTGGCGGTGTTGATTTTCACCTTTGGCGGCCGCCTGGGCGC
GTGGCGCTGGTGGCAGACCTGGACACGGGCGCAATGGTTGATTGCGATCGGTTTGTGCCCGGTGTTGCTGGCATTGAACC
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTTGCAGTGCCTTGGGTCAGTCTTGTCGTGCTGCCGCCGGCGTTG
CTCGGGACGATGTTGTTGCCCATACCCTGTGTCGGCGAAGGGCTGCTGTGGCTGGCCGGTGGTTTGATCGACGGGTTGTT
TCGCGCGCTGGCGATAATGGCCGGGCATTGGCCTGCATGGATCGCACCCTCGATACCCGCCTGGTTCTTGGCTGCTGGCG
GTCTCGGCGCGGTGTTGTTGCTGTTGCCGCGCGGCGTGCCAATGCGCCCGCTGGGCTGGCCATTGCTGTTGCTGCTGGTG
GTGCCGCCACGCGAACGGCTGGATGAGGGATTGGCCGACATCTGGCAACTGGATGTCGGCCAAGGCCTGGCCATCCTGAT
CCGCACCCGCCATCACACGTTGCTCTATGACGCTGGGCCGCGCTTTGGTGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCGCGTTGCGCAAACTGAGAGTGGAAAAACTCGATCTGATGCTGCTCAGCCATGCGGATGCCGATCACGCGGGTGGCGCT
CTGGCGATCACCCGTGGTTTGACCGTCGATCGCGTGATCAGCGGTGACCCGCCGGGACTGCCTGAGGCGTTGAGCGCCGA
AGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGGGTCGCTTTTCAACTCTGGCAATGGGCGGACGCCCGCGACAGCA
ATCAGCGCTCCTGCGTCTTGCAGATCGAGGCCAATGGCGAGCGTCTGTTGCTGACCGGCGATATCGACACCCACGCCGAA
CGTGCGCTGCTCGACAGTCCATTGGCCGTGCCGACGCCATGGCTGCAATCGCCCCATCACGGCAGCCGCAGTTCATCGTC
AATGGCGCTGCTCAAGGTGTTGCAACCCGCAGCCGTGCTGATTTCCCGTGGGCAGGGCAATTCCTTCGGCCATCCGCACC
CGACCGTGCTGGCGCGTTATCGCAAACAGGGACTGCGCATTTACGACAGCGCCGAGCAGGGTGCCATTCAGGTGCAACTG
GGCACCTTCGCGCCGCCTCGCACAATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCGCTGGCCCGCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.872	96.237	0.595
comA	Ralstonia pseudosolanacearum GMI1000	33.373	100	0.378