Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QPL68_RS01970 Genome accession   NZ_CP126629
Coordinates   376842..377816 (+) Length   324 a.a.
NCBI ID   WP_259378637.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 35-42     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371842..382816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL68_RS01935 (QPL68_01935) rpmG 372313..372462 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  QPL68_RS01940 (QPL68_01940) - 372660..373199 (+) 540 WP_000164543.1 5-formyltetrahydrofolate cyclo-ligase -
  QPL68_RS01945 (QPL68_01945) - 373211..374674 (+) 1464 WP_063651325.1 rhomboid family intramembrane serine protease -
  QPL68_RS01950 (QPL68_01950) - 374655..374858 (+) 204 WP_000087561.1 YqgQ family protein -
  QPL68_RS01955 (QPL68_01955) - 374855..375841 (+) 987 WP_000161315.1 ROK family glucokinase -
  QPL68_RS01960 (QPL68_01960) - 375841..376170 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QPL68_RS01965 (QPL68_01965) - 376167..376790 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QPL68_RS01970 (QPL68_01970) comGA 376842..377816 (+) 975 WP_259378637.1 competence type IV pilus ATPase ComGA Machinery gene
  QPL68_RS01975 (QPL68_01975) comGB 377788..378858 (+) 1071 WP_109162035.1 competence type IV pilus assembly protein ComGB Machinery gene
  QPL68_RS01980 (QPL68_01980) comGC 378872..379183 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QPL68_RS01985 (QPL68_01985) comGD 379161..379607 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  QPL68_RS01990 (QPL68_01990) comGE 379594..379893 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QPL68_RS01995 (QPL68_01995) comGF 379811..380308 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  QPL68_RS02000 (QPL68_02000) - 380405..380551 (+) 147 WP_001789879.1 hypothetical protein -
  QPL68_RS02005 (QPL68_02005) - 380541..381065 (+) 525 WP_029549655.1 shikimate kinase -
  QPL68_RS02010 (QPL68_02010) gcvT 381224..382315 (+) 1092 WP_063652124.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36899.95 Da        Isoelectric Point: 8.5461

>NTDB_id=839276 QPL68_RS01970 WP_259378637.1 376842..377816(+) (comGA) [Staphylococcus aureus strain 35-42]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGNSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILCQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=839276 QPL68_RS01970 WP_259378637.1 376842..377816(+) (comGA) [Staphylococcus aureus strain 35-42]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACATATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAATAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATGTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994