Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VOI49_RS06495 Genome accession   NZ_CP142018
Coordinates   1280928..1282919 (-) Length   663 a.a.
NCBI ID   WP_226313718.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275928..1287919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS06470 dltD 1276224..1277480 (-) 1257 WP_003051332.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  VOI49_RS06475 dltC 1277473..1277712 (-) 240 WP_002984216.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  VOI49_RS06480 dltB 1277730..1278986 (-) 1257 WP_003051335.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  VOI49_RS06485 dltA 1278983..1280521 (-) 1539 WP_324738835.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  VOI49_RS06490 - 1280533..1280676 (-) 144 WP_003051342.1 teichoic acid D-Ala incorporation-associated protein DltX -
  VOI49_RS06495 uvrB 1280928..1282919 (-) 1992 WP_226313718.1 excinuclease ABC subunit UvrB Machinery gene
  VOI49_RS06500 - 1283105..1285282 (+) 2178 WP_003051349.1 ABC transporter substrate-binding protein/permease -
  VOI49_RS06505 - 1285282..1286022 (+) 741 WP_115246141.1 amino acid ABC transporter ATP-binding protein -
  VOI49_RS06510 - 1286171..1286323 (-) 153 WP_003062002.1 hypothetical protein -
  VOI49_RS06515 - 1286320..1287699 (-) 1380 WP_226313716.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 75811.73 Da        Isoelectric Point: 4.5355

>NTDB_id=839196 VOI49_RS06495 WP_226313718.1 1280928..1282919(-) (uvrB) [Streptococcus dysgalactiae strain lu24]
MIDKRDNKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDQLLNQLVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTI
GEVDHLILFPATHFVTNDEHMEQSIAKIQAELEDQLKVFEAEGKLLEAQRLRQRTEYDIEMLREMGYTNGVENYSRHMDG
RAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTIVEQIIRPTGLLDPEIDVRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLAVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNADGHVIMYADK
VTESMQRAIDETARRREIQMAYNETHGIIPQTIKKDIRDLISISKAAESDVAETAVDYETMSRSERKEAIKTLQKQMQEA
AELLDFEMAAQIRDMILELKLMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=839196 VOI49_RS06495 WP_226313718.1 1280928..1282919(-) (uvrB) [Streptococcus dysgalactiae strain lu24]
ATGATTGATAAACGTGATAACAAACCTTTTCATTTGGTTTCAAAATATGAGCCATCTGGCGACCAACCCCAAGCTATTGA
GACCTTAGTAGACAATATTGAAGGCGGAGAAAAAGCTCAGATTCTTTTGGGTGCTACTGGGACGGGAAAGACCTATACCA
TGAGTCAGGTCATTAACAAGGTTAATAAACCGACCTTAGTGATTGCTCACAATAAAACCTTAGCGGGACAGCTTTATGGA
GAGTTCAAGGAATTTTTCCCTGATAATGCTGTGGAATATTTTGTTTCCTATTATGATTACTACCAACCGGAAGCCTATGT
GCCATCAAGCGACACCTATATCGAAAAAGACAGCTCTGTCAATGATGAGATTGATAAACTTCGTCATTCTGCAACCTCAG
CCTTATTGGAGCGTAATGATGTTATTGTAGTGGCTTCGGTCTCATGTATTTACGGACTGGGTTCTCCAAAAGAGTATGCT
GATTCAGCAGTGAGCCTCAGACCTGGACAAGAAATTTCTAGGGATCAACTGCTTAACCAGCTGGTGGATATTCAGTTTGA
GCGTAACGATATTGACTTTCAACGTGGCCGTTTTCGAGTTCGCGGGGATGTGGTTGAAGTTTTTCCCGCTTCAAGAGATG
AACATGCCTTTCGGATAGAATTTTTTGGAGATGAGATTGATCGTATTCGAGAAATTGAAAGTTTGACTGGTAAAACCATA
GGAGAAGTAGACCATTTGATTCTGTTTCCTGCTACTCACTTTGTCACCAATGATGAACACATGGAACAATCCATTGCTAA
GATTCAAGCTGAACTAGAAGATCAGTTGAAGGTTTTTGAAGCTGAAGGCAAATTATTGGAAGCGCAGCGATTACGCCAAA
GAACTGAGTATGACATTGAAATGTTAAGGGAGATGGGTTACACTAACGGTGTTGAAAACTATTCTCGCCATATGGATGGT
CGAGCAGCAGGAGAACCCCCTTATACGTTATTAGACTTCTTCCCAGAAGATTTTTTGATTATGATTGATGAAAGTCATAT
GACAATGGGGCAGATTAAAGGCATGTATAATGGTGACCAAGCCAGAAAACAAATGCTAGTTGACTATGGGTTTAGGTTGC
CCTCTGCTTTGGATAATCGTCCTTTAAGGCGGGAAGAGTTTGAAAGCCATGTGCACCAAATCGTGTATGTTTCTGCTACT
CCAGGTGACTATGAAATGGAGCAGACAGATACGATTGTGGAACAAATCATTCGTCCAACGGGCTTGCTTGATCCTGAAAT
AGATGTGCGACCAAGTATGGGGCAAATGGATGACCTATTGGGAGAAATAAATCAGCGTGTTGAACGTGGTGAGCGGACCT
TTATCACAACACTGACGAAAAAAATGGCAGAAGATCTGACAGACTATCTAAAAGAAATGGGTGTCAAGGTCAAATATATG
CATAGCGACATAAAGACCTTAGAACGGACAGAAATTATCCGTGATTTGAGGTTAGCTGTCTTTGATGTACTTATTGGAAT
CAACTTACTGCGTGAGGGAATTGATGTGCCAGAAGTTAGTCTTGTCGCCATTTTGGATGCGGATAAGGAAGGCTTCCTCC
GTAACGAGCGTGGTTTGATTCAGACTATTGGACGAGCAGCCCGGAATGCAGATGGACATGTCATTATGTATGCTGATAAG
GTCACGGAATCGATGCAACGGGCTATCGATGAAACGGCTCGTCGTCGTGAGATTCAAATGGCTTATAATGAAACACATGG
GATTATCCCACAAACCATCAAAAAGGATATCAGAGATCTTATCAGTATCAGCAAAGCAGCGGAGTCTGATGTCGCAGAAA
CTGCAGTGGACTATGAAACCATGTCTCGTTCTGAGCGAAAAGAAGCTATTAAAACCTTACAGAAGCAGATGCAAGAAGCA
GCTGAATTACTTGATTTTGAAATGGCTGCTCAAATTCGTGACATGATATTAGAGTTAAAACTAATGGATTAG

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(627-660)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(442-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.973

100

0.86
  uvrB Streptococcus pneumoniae D39

85.973

100

0.86
  uvrB Streptococcus pneumoniae TIGR4

85.822

100

0.858