Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VIX88_RS06865 Genome accession   NZ_CP142016
Coordinates   1379622..1381622 (+) Length   666 a.a.
NCBI ID   WP_064969830.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 59RAST107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1374622..1386622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIX88_RS06835 (VIX88_06835) - 1374646..1375224 (-) 579 WP_237190229.1 phage integrase SAM-like domain-containing protein -
  VIX88_RS06845 (VIX88_06845) rseP 1375645..1376976 (-) 1332 WP_064969822.1 RIP metalloprotease RseP -
  VIX88_RS06850 (VIX88_06850) - 1377085..1377513 (-) 429 WP_214193699.1 DUF6646 family protein -
  VIX88_RS06855 (VIX88_06855) - 1377594..1378355 (+) 762 WP_064969826.1 amidohydrolase -
  VIX88_RS06860 (VIX88_06860) - 1378418..1379464 (-) 1047 WP_064969828.1 Cj0069 family protein -
  VIX88_RS06865 (VIX88_06865) uvrB 1379622..1381622 (+) 2001 WP_064969830.1 excinuclease ABC subunit UvrB Machinery gene
  VIX88_RS06870 (VIX88_06870) - 1381648..1382172 (+) 525 WP_064969832.1 Crp/Fnr family transcriptional regulator -
  VIX88_RS06875 (VIX88_06875) - 1382223..1382771 (+) 549 WP_064969834.1 DinB family protein -
  VIX88_RS06880 (VIX88_06880) - 1382945..1384180 (+) 1236 WP_064969836.1 OmpP1/FadL family transporter -
  VIX88_RS06885 (VIX88_06885) - 1384193..1385704 (+) 1512 WP_064969839.1 G-D-S-L family lipolytic protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 76048.12 Da        Isoelectric Point: 5.2711

>NTDB_id=839110 VIX88_RS06865 WP_064969830.1 1379622..1381622(+) (uvrB) [Riemerella anatipestifer strain 59RAST107]
MKFKLHSEFKPTGDQPQAIDKLISGIEQGQPYQTLLGVTGSGKTFTIANVVNRIQRPTIVLAHNKTLAAQLFMEFKEFFP
ENAVEYFVSYYDYYQPEAYIASTGTYIEKDLSINEEVEKLRLSATTSLLSGRRDVLIVASVSCIYGIGNPTEFNKSLIEL
ELQSKISRTDLLHKLVSALYSRAVNEFVRGSFRVKGDVVDVFPAYADNAIRIRFFGNEIDKIQSFDPISGNIMGDFDKIN
IYPANLFVTSKETMNSAIREIQDDLVKQVDFFNEIGKNLEAKRLKERTELDLEMIKELGYCSGIENYSRYMDGRKPGSRP
FCLLDYFPKDYLMVIDESHVTIPQVHAMYGGDRSRKESLVEYGFRLPAAMDNRPLKFEEFEKMQNQVIYVSATPADYELE
KTQGEYVEQIIRPTGLLDPIIEVRPTLNQIDDLMEEIQKRAEEDERVLVTTLTKKMAEELTKYFTKFGIRTRYIHSDVDT
LERIQIMQDLRTGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGMLRSRRSMIQTVGRAARNINGKAIMYADKMTKSMQ
ATIDETNYRREKQMSYNEANGLVPQPLNKKISDVLVGHTPDFPKQEYIQKEIVKQVAETKVSYGNAEDLEKIIAEKQKQM
EVAAKQLDFILAAKLRDEIKALKGTP

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=839110 VIX88_RS06865 WP_064969830.1 1379622..1381622(+) (uvrB) [Riemerella anatipestifer strain 59RAST107]
ATGAAATTTAAACTCCATTCTGAATTTAAACCTACTGGAGACCAGCCACAAGCGATTGATAAGTTGATTTCAGGGATAGA
ACAAGGTCAACCCTACCAAACTCTACTAGGAGTTACAGGCTCTGGTAAAACTTTTACTATTGCTAATGTGGTAAACCGTA
TTCAAAGACCTACTATTGTTCTCGCTCATAACAAAACTTTGGCGGCGCAGTTATTTATGGAGTTTAAGGAATTTTTTCCT
GAAAATGCGGTAGAGTATTTCGTATCTTATTACGATTATTACCAACCCGAAGCATACATTGCTAGTACAGGAACTTACAT
AGAAAAAGACCTTAGTATAAATGAAGAGGTAGAGAAATTAAGGCTTTCTGCTACGACAAGCCTTCTTTCAGGGAGGCGAG
ATGTGCTTATAGTAGCTTCGGTGTCATGCATTTATGGTATTGGTAACCCAACGGAGTTTAATAAATCTCTTATAGAATTG
GAGCTTCAATCTAAAATTTCTAGAACAGATTTGCTCCACAAGCTAGTTAGTGCACTTTACTCTAGGGCGGTTAATGAATT
TGTGAGAGGGAGTTTTAGGGTTAAAGGAGATGTGGTAGATGTTTTTCCCGCTTATGCTGATAATGCGATTAGGATAAGGT
TTTTTGGTAACGAAATTGATAAAATCCAAAGCTTTGACCCTATTTCAGGAAATATAATGGGTGATTTTGATAAAATTAAT
ATTTACCCTGCTAATCTATTCGTTACCTCAAAAGAAACTATGAATAGTGCTATTAGAGAAATCCAAGATGACCTTGTAAA
GCAAGTGGATTTTTTTAATGAAATAGGAAAAAACCTAGAAGCTAAGCGTTTGAAAGAGCGAACGGAATTGGATTTGGAAA
TGATAAAAGAGCTGGGTTATTGTTCTGGTATAGAGAATTATTCTAGGTATATGGATGGTAGAAAACCTGGTTCTCGTCCG
TTTTGTTTATTAGACTATTTTCCTAAAGATTACCTAATGGTGATAGACGAGAGCCATGTAACCATACCTCAAGTACACGC
AATGTACGGAGGCGACCGTAGCAGAAAAGAGAGCTTGGTAGAATATGGGTTTAGATTGCCCGCTGCAATGGATAACAGAC
CCTTAAAGTTTGAGGAGTTTGAAAAAATGCAAAACCAAGTTATCTATGTGTCTGCCACTCCAGCGGATTATGAATTGGAA
AAGACTCAAGGCGAATATGTGGAGCAGATTATCCGCCCGACAGGTTTACTAGACCCAATTATAGAGGTAAGACCTACGCT
TAATCAGATAGATGATTTGATGGAGGAAATCCAAAAAAGAGCGGAGGAAGACGAGAGAGTCTTGGTAACCACCCTCACAA
AAAAAATGGCAGAAGAACTCACTAAATATTTCACCAAATTTGGCATACGAACTAGATATATTCATTCTGATGTGGATACG
CTAGAACGTATACAGATAATGCAAGATTTGCGTACAGGGCTTTTTGATGTGCTTGTGGGAGTTAATCTACTTAGAGAAGG
TTTAGATTTACCAGAGGTATCTTTGGTGGCTATCTTAGATGCAGATAAAGAGGGTATGCTTCGTTCTCGCCGTTCAATGA
TACAGACGGTAGGACGAGCGGCTAGAAACATCAATGGCAAAGCCATTATGTATGCAGATAAGATGACTAAATCTATGCAA
GCCACCATTGATGAAACCAACTATCGTAGAGAAAAACAAATGAGCTACAACGAGGCTAACGGTCTTGTACCGCAGCCTTT
AAATAAGAAAATATCCGATGTTTTGGTAGGGCATACACCTGATTTCCCGAAACAAGAATATATCCAAAAAGAAATTGTGA
AGCAGGTAGCTGAAACAAAGGTTAGCTATGGTAATGCAGAGGATTTGGAGAAAATAATAGCAGAGAAACAAAAACAAATG
GAGGTTGCCGCAAAACAATTAGACTTTATCTTAGCCGCAAAACTAAGAGATGAAATAAAGGCTCTAAAAGGAACACCGTA
A

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-247)

UvrB/uvrC motif (UVR)

(630-663)

Type III restriction enzyme, res subunit (ResIII)

(9-90)

Ultra-violet resistance protein B (UvrB)

(550-591)

Helicase conserved C-terminal domain (Helicase_C)

(430-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.541

99.85

0.565
  uvrB Streptococcus pneumoniae R6

56.391

99.85

0.563
  uvrB Streptococcus pneumoniae D39

56.391

99.85

0.563