Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QPK28_RS14515 Genome accession   NZ_CP126576
Coordinates   2741294..2741923 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain CQMB003     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2736294..2746923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS14490 rpsT 2736508..2736774 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  QPK28_RS14495 holA 2736836..2737879 (-) 1044 WP_009327866.1 DNA polymerase III subunit delta -
  QPK28_RS14500 - 2738109..2738240 (+) 132 WP_003183686.1 YqzM family protein -
  QPK28_RS14505 - 2738265..2740652 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  QPK28_RS14510 - 2740656..2741225 (-) 570 WP_003183690.1 ComE operon protein 2 -
  QPK28_RS14515 comEA 2741294..2741923 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  QPK28_RS14520 comER 2742007..2742828 (+) 822 WP_003183696.1 late competence protein ComER -
  QPK28_RS14525 - 2742898..2743653 (-) 756 WP_003183697.1 class I SAM-dependent methyltransferase -
  QPK28_RS14530 rsfS 2743650..2744006 (-) 357 WP_025808063.1 ribosome silencing factor -
  QPK28_RS14535 yqeK 2744020..2744583 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QPK28_RS14540 - 2744573..2745142 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  QPK28_RS14545 yhbY 2745161..2745451 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  QPK28_RS14550 aroE 2745445..2746281 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=838808 QPK28_RS14515 WP_003183693.1 2741294..2741923(-) (comEA) [Bacillus licheniformis strain CQMB003]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=838808 QPK28_RS14515 WP_003183693.1 2741294..2741923(-) (comEA) [Bacillus licheniformis strain CQMB003]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526