Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUL007_RS05470 | Genome accession | NZ_CP126569 |
| Coordinates | 1044946..1045497 (+) | Length | 183 a.a. |
| NCBI ID | WP_058221563.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain UL007 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1035019..1075337 | 1044946..1045497 | within | 0 |
Gene organization within MGE regions
Location: 1035019..1075337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUL007_RS05385 (LLUL007_05380) | - | 1035019..1035354 (+) | 336 | WP_011676389.1 | putative DNA-binding protein | - |
| LLUL007_RS05395 (LLUL007_05390) | - | 1035973..1037055 (-) | 1083 | WP_396426263.1 | tyrosine-type recombinase/integrase | - |
| LLUL007_RS05400 (LLUL007_05395) | - | 1037240..1037827 (-) | 588 | WP_396426264.1 | hypothetical protein | - |
| LLUL007_RS05405 (LLUL007_05400) | - | 1037837..1038364 (-) | 528 | WP_396426265.1 | helix-turn-helix domain-containing protein | - |
| LLUL007_RS05410 (LLUL007_05405) | - | 1038627..1038797 (+) | 171 | WP_211753017.1 | putative transcriptional regulator | - |
| LLUL007_RS05415 (LLUL007_05410) | - | 1038858..1039319 (-) | 462 | WP_396426266.1 | hypothetical protein | - |
| LLUL007_RS05420 (LLUL007_05415) | istB | 1039395..1040153 (-) | 759 | WP_003331414.1 | IS21-like element IS712 family helper ATPase IstB | - |
| LLUL007_RS05425 (LLUL007_05420) | istA | 1040165..1041388 (-) | 1224 | WP_347450350.1 | IS21-like element IS712 family transposase | - |
| LLUL007_RS05430 (LLUL007_05425) | - | 1041550..1041900 (+) | 351 | WP_396426267.1 | helix-turn-helix domain-containing protein | - |
| LLUL007_RS05435 (LLUL007_05430) | - | 1041915..1042658 (+) | 744 | WP_396426268.1 | ORF6C domain-containing protein | - |
| LLUL007_RS05440 (LLUL007_05435) | - | 1042671..1042961 (+) | 291 | WP_023188819.1 | phage protein | - |
| LLUL007_RS05445 (LLUL007_05440) | - | 1043028..1043234 (+) | 207 | WP_021214423.1 | hypothetical protein | - |
| LLUL007_RS05450 (LLUL007_05445) | - | 1043227..1043604 (-) | 378 | WP_396426269.1 | DUF2513 domain-containing protein | - |
| LLUL007_RS05455 (LLUL007_05450) | - | 1043709..1043945 (+) | 237 | WP_015967983.1 | DUF1408 domain-containing protein | - |
| LLUL007_RS05460 (LLUL007_05455) | - | 1044043..1044432 (+) | 390 | WP_396426270.1 | hypothetical protein | - |
| LLUL007_RS05465 (LLUL007_05460) | - | 1044441..1044932 (+) | 492 | WP_050499054.1 | ERF family protein | - |
| LLUL007_RS05470 (LLUL007_05465) | ssb | 1044946..1045497 (+) | 552 | WP_058221563.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUL007_RS05475 (LLUL007_05470) | - | 1045630..1046406 (+) | 777 | WP_014572166.1 | phage replisome organiser protein | - |
| LLUL007_RS05480 (LLUL007_05475) | - | 1046425..1047300 (+) | 876 | WP_396426272.1 | DnaA ATPase domain-containing protein | - |
| LLUL007_RS05485 (LLUL007_05480) | - | 1047297..1047461 (+) | 165 | WP_396426273.1 | hypothetical protein | - |
| LLUL007_RS05490 (LLUL007_05485) | - | 1047451..1047840 (+) | 390 | WP_396426275.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LLUL007_RS05495 (LLUL007_05490) | - | 1047843..1048082 (+) | 240 | WP_396426276.1 | DUF1031 domain-containing protein | - |
| LLUL007_RS05500 (LLUL007_05495) | - | 1048191..1048370 (+) | 180 | WP_015966806.1 | DUF1497 domain-containing protein | - |
| LLUL007_RS05505 (LLUL007_05500) | - | 1048360..1048929 (+) | 570 | WP_396426277.1 | DUF658 family protein | - |
| LLUL007_RS05510 (LLUL007_05505) | - | 1048983..1049342 (+) | 360 | WP_396426278.1 | hypothetical protein | - |
| LLUL007_RS05515 (LLUL007_05510) | - | 1049335..1049922 (+) | 588 | WP_396426279.1 | DUF1642 domain-containing protein | - |
| LLUL007_RS05520 (LLUL007_05515) | - | 1049919..1050083 (+) | 165 | WP_396426280.1 | hypothetical protein | - |
| LLUL007_RS05525 (LLUL007_05520) | dut | 1050080..1050499 (+) | 420 | WP_396426281.1 | dUTP diphosphatase | - |
| LLUL007_RS05530 (LLUL007_05525) | - | 1050502..1051068 (+) | 567 | WP_396426282.1 | hypothetical protein | - |
| LLUL007_RS05535 (LLUL007_05530) | - | 1051061..1051330 (+) | 270 | WP_396426283.1 | hypothetical protein | - |
| LLUL007_RS05540 (LLUL007_05535) | - | 1051320..1051640 (+) | 321 | WP_396426284.1 | hypothetical protein | - |
| LLUL007_RS05545 (LLUL007_05540) | - | 1051808..1052038 (+) | 231 | WP_019291456.1 | hypothetical protein | - |
| LLUL007_RS05550 (LLUL007_05545) | - | 1052035..1052205 (+) | 171 | WP_396426285.1 | DUF1660 domain-containing protein | - |
| LLUL007_RS05555 (LLUL007_05550) | - | 1052386..1052571 (+) | 186 | WP_396426286.1 | hypothetical protein | - |
| LLUL007_RS05560 (LLUL007_05555) | - | 1052960..1053232 (+) | 273 | WP_396426287.1 | hypothetical protein | - |
| LLUL007_RS05565 (LLUL007_05560) | - | 1053234..1053482 (+) | 249 | WP_396426288.1 | hypothetical protein | - |
| LLUL007_RS05570 (LLUL007_05565) | - | 1053539..1054429 (+) | 891 | WP_015082326.1 | IS982-like element IS982B family transposase | - |
| LLUL007_RS05575 (LLUL007_05570) | - | 1054691..1054990 (+) | 300 | WP_017864643.1 | hypothetical protein | - |
| LLUL007_RS05580 (LLUL007_05575) | - | 1055039..1055338 (+) | 300 | WP_396426289.1 | HNH endonuclease | - |
| LLUL007_RS05585 (LLUL007_05580) | - | 1055480..1056073 (+) | 594 | WP_396426290.1 | P27 family phage terminase small subunit | - |
| LLUL007_RS05590 (LLUL007_05585) | - | 1056070..1057809 (+) | 1740 | WP_396426291.1 | terminase large subunit domain-containing protein | - |
| LLUL007_RS05600 (LLUL007_05595) | - | 1058420..1059613 (+) | 1194 | WP_396426292.1 | phage portal protein | - |
| LLUL007_RS05605 (LLUL007_05600) | - | 1059600..1060223 (+) | 624 | WP_396426293.1 | head maturation protease, ClpP-related | - |
| LLUL007_RS05610 (LLUL007_05605) | - | 1060260..1061371 (+) | 1112 | WP_088792927.1 | IS3-like element IS981 family transposase | - |
| LLUL007_RS05615 (LLUL007_05610) | - | 1061428..1061859 (+) | 432 | WP_014572749.1 | hypothetical protein | - |
| LLUL007_RS05620 (LLUL007_05615) | - | 1062082..1062804 (+) | 723 | WP_014572748.1 | epoxyqueuosine reductase QueH | - |
| LLUL007_RS05625 (LLUL007_05620) | yoaB | 1063062..1065695 (+) | 2634 | WP_396426294.1 | cation-translocating P-type ATPase | - |
| LLUL007_RS05630 (LLUL007_05625) | - | 1065738..1066366 (-) | 629 | Protein_1089 | glycoside hydrolase family 73 protein | - |
| LLUL007_RS05635 (LLUL007_05630) | - | 1066594..1067067 (+) | 474 | WP_011676368.1 | glutathione peroxidase | - |
| LLUL007_RS05640 (LLUL007_05635) | carB | 1067417..1070611 (+) | 3195 | WP_014572744.1 | carbamoyl-phosphate synthase large subunit | - |
| LLUL007_RS05645 (LLUL007_05640) | - | 1070895..1071392 (+) | 498 | WP_396426295.1 | hypothetical protein | - |
| LLUL007_RS05650 (LLUL007_05645) | - | 1071468..1073378 (+) | 1911 | WP_011676365.1 | hypothetical protein | - |
| LLUL007_RS05655 (LLUL007_05650) | - | 1073492..1074205 (+) | 714 | WP_080513958.1 | WxL protein peptidoglycan domain-containing protein | - |
| LLUL007_RS05660 (LLUL007_05655) | - | 1074226..1075337 (+) | 1112 | WP_088792927.1 | IS3-like element IS981 family transposase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20998.76 Da Isoelectric Point: 6.4657
>NTDB_id=838730 LLUL007_RS05470 WP_058221563.1 1044946..1045497(+) (ssb) [Lactococcus cremoris strain UL007]
MINNVVLVGRLTKDVELRYTPQNQATATFSLAVSRSFKNANGERETDFINCVIWRQQAENMANFTHKGSLIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRSQGQQQQQQGNYNQNQNNYQNQGQQNTVQQQHNQGNYQRQPQGNYQNQQQSAQQ
RAQQPDPNFGGAPMEINDEDLPF
MINNVVLVGRLTKDVELRYTPQNQATATFSLAVSRSFKNANGERETDFINCVIWRQQAENMANFTHKGSLIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRSQGQQQQQQGNYNQNQNNYQNQGQQNTVQQQHNQGNYQRQPQGNYQNQQQSAQQ
RAQQPDPNFGGAPMEINDEDLPF
Nucleotide
Download Length: 552 bp
>NTDB_id=838730 LLUL007_RS05470 WP_058221563.1 1044946..1045497(+) (ssb) [Lactococcus cremoris strain UL007]
ATGATAAATAACGTAGTTTTAGTCGGAAGACTAACTAAAGATGTAGAACTTAGATATACTCCACAAAATCAAGCTACAGC
AACTTTCTCGCTTGCAGTGAGTCGCTCTTTCAAAAATGCCAATGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCT
GGCGACAACAAGCTGAAAATATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA
AACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTGTTGCAGATAGTTTCCAACTTCTTGAAAGTAGAAG
CCAAGGTCAACAACAGCAACAACAAGGAAATTACAATCAAAACCAAAATAATTACCAAAATCAGGGTCAACAAAATACTG
TTCAACAGCAACATAACCAAGGTAACTACCAAAGACAACCTCAAGGTAATTATCAAAATCAACAACAATCAGCTCAACAA
AGAGCCCAACAACCTGATCCAAACTTTGGAGGTGCTCCGATGGAAATCAACGATGAAGACCTGCCATTCTAA
ATGATAAATAACGTAGTTTTAGTCGGAAGACTAACTAAAGATGTAGAACTTAGATATACTCCACAAAATCAAGCTACAGC
AACTTTCTCGCTTGCAGTGAGTCGCTCTTTCAAAAATGCCAATGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCT
GGCGACAACAAGCTGAAAATATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA
AACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTGTTGCAGATAGTTTCCAACTTCTTGAAAGTAGAAG
CCAAGGTCAACAACAGCAACAACAAGGAAATTACAATCAAAACCAAAATAATTACCAAAATCAGGGTCAACAAAATACTG
TTCAACAGCAACATAACCAAGGTAACTACCAAAGACAACCTCAAGGTAATTATCAAAATCAACAACAATCAGCTCAACAA
AGAGCCCAACAACCTGATCCAAACTTTGGAGGTGCTCCGATGGAAATCAACGATGAAGACCTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.851 |
100 |
0.574 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.514 |
100 |
0.541 |
| ssb | Glaesserella parasuis strain SC1401 |
34.555 |
100 |
0.361 |