Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   QNO02_RS02160 Genome accession   NZ_CP126535
Coordinates   450831..451544 (+) Length   237 a.a.
NCBI ID   WP_074093207.1    Uniprot ID   -
Organism   Paenibacillus sp. PK1-4R     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 445831..456544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNO02_RS02135 (QNO02_02135) - 446539..447795 (+) 1257 WP_289390960.1 DUF445 domain-containing protein -
  QNO02_RS02140 (QNO02_02140) - 447881..448234 (-) 354 WP_091038110.1 YxeA family protein -
  QNO02_RS02145 (QNO02_02145) - 448264..448995 (-) 732 WP_289390963.1 ABC transporter permease -
  QNO02_RS02150 (QNO02_02150) - 449008..449757 (-) 750 WP_091038114.1 ABC transporter permease -
  QNO02_RS02155 (QNO02_02155) - 449757..450674 (-) 918 WP_074096700.1 ABC transporter ATP-binding protein -
  QNO02_RS02160 (QNO02_02160) scnR 450831..451544 (+) 714 WP_074093207.1 response regulator transcription factor Regulator
  QNO02_RS02165 (QNO02_02165) - 451544..452926 (+) 1383 WP_074093208.1 HAMP domain-containing sensor histidine kinase -
  QNO02_RS02170 (QNO02_02170) - 453204..453386 (+) 183 WP_074093209.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27038.38 Da        Isoelectric Point: 4.8542

>NTDB_id=838608 QNO02_RS02160 WP_074093207.1 450831..451544(+) (scnR) [Paenibacillus sp. PK1-4R]
MELLKNKKILIVDDEPEIREMIERFLRKEGFFRVYTADNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGEQTIDLESAVVQGTDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPVFLLTVRGLGYKLMAQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=838608 QNO02_RS02160 WP_074093207.1 450831..451544(+) (scnR) [Paenibacillus sp. PK1-4R]
ATGGAATTATTGAAGAATAAGAAAATATTGATCGTAGATGATGAACCTGAGATACGGGAAATGATTGAACGTTTTTTACG
TAAAGAAGGTTTTTTTCGGGTCTATACGGCCGATAACTTCGTGAATGCCTTGGCAGTATGCAGGCTTGAAAAGCCGGATG
CAGCAATCCTGGACGTGATGCTTCCAGATGGGGATGGGTTCTCTCTGCTCTCTTCGATCCGGTCATTCTCGGACATGCCT
GTTCTGTTTCTGTCGGCACGTGGTGAAGATGAGGATCGATTGCTCGGTCTGGGGCTGGGAGCGGATGATTATATGGTCAA
GCCCTTTCTGCCAAGAGAGTTGATTCTCAGGCTGATGGCTATTCTGAAGCGGGTATATGCCTCCAATACGGTGGAGAGAT
TACCTGTATTCCGTTTAGGTGAACAAACCATTGATCTGGAGAGTGCTGTTGTGCAGGGGACAGACAGGGAGCTTCCATTG
ACGGCTAAGGAGCACGCCATACTGATCAAGTTGTATGAGAATCAAGGCCGGATTGTAACCAGCGATGCCCTGTGTCAAGC
CGTATGGGGAGACGAGAGTTATGGTTATGAAAATACACTGATGGTGCATGTTCGGCGAATCCGGGAGAAGATTGAGGAAG
ACCCATCCAAACCGGTATTTTTGCTAACCGTTCGGGGCCTTGGTTACAAACTGATGGCTCAGGAGTCTAGGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.22

95.781

0.481
  micA Streptococcus pneumoniae Cp1015

41.304

97.046

0.401
  vicR Streptococcus mutans UA159

39.056

98.312

0.384