Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QN218_RS06240 Genome accession   NZ_CP126534
Coordinates   1193597..1194667 (+) Length   356 a.a.
NCBI ID   WP_060399020.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain BSY82     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188597..1199667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN218_RS06205 mgsR 1188991..1189368 (+) 378 WP_003236975.1 transcriptional regulator MgsR -
  QN218_RS06215 - 1189593..1190432 (+) 840 WP_003236972.1 STAS domain-containing protein -
  QN218_RS06220 - 1190492..1191820 (-) 1329 WP_060399023.1 hemolysin family protein -
  QN218_RS06225 corA 1191964..1192908 (+) 945 WP_003236968.1 magnesium transporter CorA -
  QN218_RS06230 - 1192971..1193381 (+) 411 WP_060399022.1 CBS domain-containing protein -
  QN218_RS06235 - 1193359..1193634 (+) 276 WP_060399021.1 hypothetical protein -
  QN218_RS06240 comGA 1193597..1194667 (+) 1071 WP_060399020.1 competence protein ComGA Machinery gene
  QN218_RS06245 comGB 1194654..1195691 (+) 1038 WP_060399019.1 competence type IV pilus assembly protein ComGB Machinery gene
  QN218_RS06250 comGC 1195705..1196001 (+) 297 WP_003236957.1 comG operon protein ComGC Machinery gene
  QN218_RS06255 comGD 1195991..1196422 (+) 432 WP_060399018.1 competence type IV pilus minor pilin ComGD Machinery gene
  QN218_RS06260 comGE 1196406..1196750 (+) 345 WP_060399017.1 competence type IV pilus minor pilin ComGE Machinery gene
  QN218_RS06265 comGF 1196776..1197159 (+) 384 WP_060399016.1 competence type IV pilus minor pilin ComGF Machinery gene
  QN218_RS06270 comGG 1197160..1197534 (+) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  QN218_RS06275 - 1197605..1197784 (+) 180 WP_003236949.1 YqzE family protein -
  QN218_RS06280 - 1197826..1198152 (-) 327 WP_029316858.1 YqzG/YhdC family protein -
  QN218_RS06285 tapA 1198425..1199189 (+) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40470.66 Da        Isoelectric Point: 9.1889

>NTDB_id=838547 QN218_RS06240 WP_060399020.1 1193597..1194667(+) (comGA) [Bacillus inaquosorum strain BSY82]
MDSIEKISRTLIEEAYITKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEDCVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGHVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIQQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRSTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=838547 QN218_RS06240 WP_060399020.1 1193597..1194667(+) (comGA) [Bacillus inaquosorum strain BSY82]
TTGGATTCAATAGAAAAGATAAGCAGAACCTTGATTGAAGAGGCATATATAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGTGATGCCATCATTCATTTTCGGGTTGATCATGCATTGTTGAAAAAAAGGAACATGAAAAAAGAAGACTGTG
TAAGACTGATTTCACATTTTAAATTTCTCTCAGCGATGGACATAGGGGAAAGACGAAAGCCGCAAAATGGTTCGCTTACG
TTAAAGCTTGAAGAGGGACATGTTCATTTAAGAATGTCAACGCTCCCTACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATATAATATCCCTTCGATTGATAAACTGTCATTATTTCCGAAGACAGGAGCCACCTTGCTCTCATTTTTAA
AACATTCCCACGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACCACTACACTATACTCTCTTGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACACTGGAGGACCCTGTTGAAACAAGGGACGAGGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCGGGTGTGACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCCAAAATTGCGGTGCGGGCAGCGATGACGGGGCATTTGGTGCTGACGAGCCTTCAC
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATCAATATGAATGAAATCCAACAGACCGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCGGTGTATTGCCGCCAGTCAC
GAAGCACCAGGAGAGCAAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAGTATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTTGGCTACTTGACGACAAACAATTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.348

100

0.963
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362