Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QPL78_RS17905 Genome accession   NZ_CP126530
Coordinates   3483935..3484624 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3478935..3489624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS17870 (QPL78_17870) flgN 3479118..3479600 (-) 483 WP_101859868.1 flagellar protein FlgN -
  QPL78_RS17875 (QPL78_17875) flgM 3479615..3479881 (-) 267 WP_101859867.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPL78_RS17880 (QPL78_17880) - 3479961..3480380 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  QPL78_RS17885 (QPL78_17885) comFC 3480454..3481176 (-) 723 WP_284559812.1 phosphoribosyltransferase family protein Machinery gene
  QPL78_RS17890 (QPL78_17890) - 3481140..3481436 (-) 297 WP_059292436.1 competence protein ComFB -
  QPL78_RS17895 (QPL78_17895) comFA 3481493..3482887 (-) 1395 WP_284559813.1 ATP-dependent helicase ComFA Machinery gene
  QPL78_RS17900 (QPL78_17900) - 3482994..3483839 (-) 846 WP_101864688.1 DegV family protein -
  QPL78_RS17905 (QPL78_17905) degU 3483935..3484624 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QPL78_RS17910 (QPL78_17910) degS 3484707..3485864 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  QPL78_RS17915 (QPL78_17915) - 3486081..3486734 (+) 654 WP_101859864.1 YigZ family protein -
  QPL78_RS17920 (QPL78_17920) - 3486734..3487912 (+) 1179 WP_284559814.1 LCP family protein -
  QPL78_RS17925 (QPL78_17925) - 3487988..3489064 (-) 1077 WP_010332075.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=838516 QPL78_RS17905 WP_003219701.1 3483935..3484624(-) (degU) [Bacillus halotolerans strain Tehuacan_S4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=838516 QPL78_RS17905 WP_003219701.1 3483935..3484624(-) (degU) [Bacillus halotolerans strain Tehuacan_S4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAAGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1