Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QPL78_RS17885 Genome accession   NZ_CP126530
Coordinates   3480454..3481176 (-) Length   240 a.a.
NCBI ID   WP_284559812.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3475454..3486176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS17850 (QPL78_17850) fliW 3475596..3476027 (-) 432 WP_024123020.1 flagellar assembly protein FliW -
  QPL78_RS17855 (QPL78_17855) - 3476048..3476623 (-) 576 WP_284559809.1 DUF6470 family protein -
  QPL78_RS17860 (QPL78_17860) flgL 3476670..3477566 (-) 897 WP_284559810.1 flagellar hook-associated protein FlgL -
  QPL78_RS17865 (QPL78_17865) flgK 3477576..3479099 (-) 1524 WP_284559811.1 flagellar hook-associated protein FlgK -
  QPL78_RS17870 (QPL78_17870) flgN 3479118..3479600 (-) 483 WP_101859868.1 flagellar protein FlgN -
  QPL78_RS17875 (QPL78_17875) flgM 3479615..3479881 (-) 267 WP_101859867.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPL78_RS17880 (QPL78_17880) - 3479961..3480380 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  QPL78_RS17885 (QPL78_17885) comFC 3480454..3481176 (-) 723 WP_284559812.1 phosphoribosyltransferase family protein Machinery gene
  QPL78_RS17890 (QPL78_17890) - 3481140..3481436 (-) 297 WP_059292436.1 competence protein ComFB -
  QPL78_RS17895 (QPL78_17895) comFA 3481493..3482887 (-) 1395 WP_284559813.1 ATP-dependent helicase ComFA Machinery gene
  QPL78_RS17900 (QPL78_17900) - 3482994..3483839 (-) 846 WP_101864688.1 DegV family protein -
  QPL78_RS17905 (QPL78_17905) degU 3483935..3484624 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QPL78_RS17910 (QPL78_17910) degS 3484707..3485864 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27071.29 Da        Isoelectric Point: 8.6986

>NTDB_id=838514 QPL78_RS17885 WP_284559812.1 3480454..3481176(-) (comFC) [Bacillus halotolerans strain Tehuacan_S4]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTVHDVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNDFSSEFSAVYPDKRLVFVPIPLSEERKAERGFNQSQMLAECL
NRPILNPLIRLNNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGKAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=838514 QPL78_RS17885 WP_284559812.1 3480454..3481176(-) (comFC) [Bacillus halotolerans strain Tehuacan_S4]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAACAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGTTCATGATGTGTGTGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCGATAATAAGCGCTTTTAAAAATGACTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGTTCGTTCCCATTCCGTTAAGCGAAGAACGGAAAGCAGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCCTCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGCTCCGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCAAAGCTGGTTCTGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

76.25

100

0.763