Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QPL78_RS15955 Genome accession   NZ_CP126530
Coordinates   3093355..3093999 (-) Length   214 a.a.
NCBI ID   WP_101864137.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088355..3098999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS15920 (QPL78_15920) - 3089548..3089979 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  QPL78_RS15925 (QPL78_15925) - 3089979..3090320 (+) 342 WP_024122674.1 Na(+)/H(+) antiporter subunit C -
  QPL78_RS15930 (QPL78_15930) - 3090313..3091794 (+) 1482 WP_101864139.1 Na+/H+ antiporter subunit D -
  QPL78_RS15935 (QPL78_15935) - 3091800..3092276 (+) 477 WP_101864138.1 Na+/H+ antiporter subunit E -
  QPL78_RS15940 (QPL78_15940) - 3092276..3092560 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  QPL78_RS15945 (QPL78_15945) mnhG 3092544..3092918 (+) 375 WP_059292644.1 monovalent cation/H(+) antiporter subunit G -
  QPL78_RS15950 (QPL78_15950) - 3092957..3093337 (-) 381 WP_024122679.1 hotdog fold thioesterase -
  QPL78_RS15955 (QPL78_15955) comA 3093355..3093999 (-) 645 WP_101864137.1 two-component system response regulator ComA Regulator
  QPL78_RS15960 (QPL78_15960) comP 3094080..3096386 (-) 2307 WP_059292643.1 histidine kinase Regulator
  QPL78_RS15965 (QPL78_15965) comX 3096402..3096623 (-) 222 WP_059292642.1 competence pheromone ComX -
  QPL78_RS15970 (QPL78_15970) - 3096620..3097489 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  QPL78_RS15975 (QPL78_15975) degQ 3097674..3097814 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  QPL78_RS15980 (QPL78_15980) - 3098275..3098643 (+) 369 WP_024122684.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24123.45 Da        Isoelectric Point: 4.6788

>NTDB_id=838509 QPL78_RS15955 WP_101864137.1 3093355..3093999(-) (comA) [Bacillus halotolerans strain Tehuacan_S4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=838509 QPL78_RS15955 WP_101864137.1 3093355..3093999(-) (comA) [Bacillus halotolerans strain Tehuacan_S4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAACCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATAGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991