Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QPL78_RS02220 Genome accession   NZ_CP126530
Coordinates   438513..439463 (+) Length   316 a.a.
NCBI ID   WP_010333025.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433513..444463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS02195 (QPL78_02195) rapC 434903..436051 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  QPL78_RS02200 (QPL78_02200) phrC 436035..436157 (+) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QPL78_RS02205 (QPL78_02205) - 436262..436354 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  QPL78_RS02210 (QPL78_02210) - 436501..436611 (-) 111 WP_024120215.1 YjcZ family sporulation protein -
  QPL78_RS02215 (QPL78_02215) - 436763..438127 (-) 1365 WP_095714086.1 aspartate kinase -
  QPL78_RS02220 (QPL78_02220) ceuB 438513..439463 (+) 951 WP_010333025.1 petrobactin ABC transporter permease YclN Machinery gene
  QPL78_RS02225 (QPL78_02225) yclO 439456..440403 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -
  QPL78_RS02230 (QPL78_02230) yclP 440397..441155 (+) 759 WP_095714087.1 petrobactin ABC transporter ATP-binding protein YclP -
  QPL78_RS02235 (QPL78_02235) - 441177..442130 (+) 954 WP_101863986.1 siderophore ABC transporter substrate-binding protein -
  QPL78_RS02240 (QPL78_02240) - 442179..443597 (-) 1419 WP_095714088.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35011.45 Da        Isoelectric Point: 9.8262

>NTDB_id=838457 QPL78_RS02220 WP_010333025.1 438513..439463(+) (ceuB) [Bacillus halotolerans strain Tehuacan_S4]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLIAFVFALVGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=838457 QPL78_RS02220 WP_010333025.1 438513..439463(+) (ceuB) [Bacillus halotolerans strain Tehuacan_S4]
ATGAAGCTACGTTACTTATTTTTTCTACTTATCATATTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAAGAAGAGGCGTCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTCTGA
TCGCGGGCATGAGCATGAGCATCTGCGGGCTGATTATGCAGCAGATCACCAGAAATAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTACATCGGCAAGTCCTTTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGCAATTTTCTGTTTATGAAAATTCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTAGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACCTGATC
CAGAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTTTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACGTCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCGATCTACAGAGGAGACAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCATATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538