Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QPL78_RS02195 Genome accession   NZ_CP126530
Coordinates   434903..436051 (+) Length   382 a.a.
NCBI ID   WP_024120212.1    Uniprot ID   A0A7G7UCE4
Organism   Bacillus halotolerans strain Tehuacan_S4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 429903..441051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL78_RS02175 (QPL78_02175) - 430274..430954 (-) 681 WP_095714083.1 ABC transporter ATP-binding protein -
  QPL78_RS02180 (QPL78_02180) - 430970..432424 (-) 1455 WP_101863984.1 ABC transporter permease -
  QPL78_RS02185 (QPL78_02185) - 432637..433320 (+) 684 WP_284560189.1 response regulator transcription factor -
  QPL78_RS02190 (QPL78_02190) - 433307..434731 (+) 1425 WP_101860980.1 HAMP domain-containing sensor histidine kinase -
  QPL78_RS02195 (QPL78_02195) rapC 434903..436051 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  QPL78_RS02200 (QPL78_02200) phrC 436035..436157 (+) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QPL78_RS02205 (QPL78_02205) - 436262..436354 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  QPL78_RS02210 (QPL78_02210) - 436501..436611 (-) 111 WP_024120215.1 YjcZ family sporulation protein -
  QPL78_RS02215 (QPL78_02215) - 436763..438127 (-) 1365 WP_095714086.1 aspartate kinase -
  QPL78_RS02220 (QPL78_02220) ceuB 438513..439463 (+) 951 WP_010333025.1 petrobactin ABC transporter permease YclN Machinery gene
  QPL78_RS02225 (QPL78_02225) yclO 439456..440403 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45690.75 Da        Isoelectric Point: 5.2483

>NTDB_id=838455 QPL78_RS02195 WP_024120212.1 434903..436051(+) (rapC) [Bacillus halotolerans strain Tehuacan_S4]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVSDHIERAEFYFKIAEAYYYMKQTYF
SLIHIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQKAQLVGRAFYNLGLCYYNQDLLD
PAIEHFEKAVSTFENSRITNSLPQAYFLITLIYYKRGKHEKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQAQPNTEG
IERCFRYLKNKNMYADIEDLGLEVAKYYYEQKWFELSASYFLRVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=838455 QPL78_RS02195 WP_024120212.1 434903..436051(+) (rapC) [Bacillus halotolerans strain Tehuacan_S4]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACCTTCAGCGT
GCCGGATGCCGAGGTGCTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGTTATATT
ACTCACTAATGGAATTTCGCCACCAGCTTATGCTTGATTATCTCGAGCCGCTGGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCACGAAATATAGACAGCAACCAAGCTGATCTGAAAGGGCTTCTCGATTATTATGTGAATTTTTT
CCGTGGAATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTACAAACAGGCGGAGAAAAAACTTTCTT
TTGTTTCCGATCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTACTTT
TCATTGATTCATATCAAAAATGCATATGAAATTTATGTAGAGCAGGAAACCTATAATGTTCGGATTATCCAATGCCATTT
TGTGTTCGGGGTTAACCTCATGGATGAGAGAAATTTTGAACAAGCCGCACGGCATTTCAAATTGGCGCTGGAGATGGCGG
AAGCGGAACAAAAAGCCCAATTGGTCGGAAGAGCATTTTATAATTTAGGGCTGTGTTATTACAATCAAGACCTTCTCGAC
CCTGCCATTGAACATTTTGAGAAAGCGGTTTCCACTTTTGAAAACAGCAGAATCACCAATTCTCTGCCTCAAGCATATTT
TTTAATAACACTTATTTATTATAAACGCGGAAAACATGAGAAGGCCTCGGAATATCACAAGAGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGATTACGCGGTAAAATTTGAGTTTTTACAATCCCTATATCAGGCACAGCCCAATACAGAAGGA
ATCGAACGATGTTTCCGATATTTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGGCCTAGAAGTAGCAAAATA
TTACTATGAACAAAAATGGTTTGAACTGTCTGCTTCCTACTTTCTTAGAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(224-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UCE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

95.026

100

0.95
  rapF Bacillus subtilis subsp. subtilis str. 168

56.316

99.476

0.56