Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QPL77_RS19450 Genome accession   NZ_CP126521
Coordinates   3797448..3797993 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain Monterrey_S2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3792448..3802993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS19425 (QPL77_19425) - 3792710..3793318 (-) 609 WP_151022144.1 alpha/beta hydrolase -
  QPL77_RS19430 (QPL77_19430) - 3793315..3794265 (-) 951 WP_211062808.1 ring-cleaving dioxygenase -
  QPL77_RS19435 (QPL77_19435) - 3794479..3795996 (-) 1518 WP_211062809.1 ABC transporter permease/substrate-binding protein -
  QPL77_RS19440 (QPL77_19440) - 3795989..3796954 (-) 966 WP_211062810.1 ABC transporter ATP-binding protein -
  QPL77_RS19445 (QPL77_19445) rpsR 3797164..3797403 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  QPL77_RS19450 (QPL77_19450) ssbA 3797448..3797993 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  QPL77_RS19455 (QPL77_19455) rpsF 3798030..3798317 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  QPL77_RS19460 (QPL77_19460) ychF 3798426..3799526 (-) 1101 WP_012011909.1 redox-regulated ATPase YchF -
  QPL77_RS19465 (QPL77_19465) - 3799743..3799949 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  QPL77_RS19470 (QPL77_19470) - 3800235..3801554 (+) 1320 WP_211062811.1 hydrolase -
  QPL77_RS19475 (QPL77_19475) - 3801570..3801980 (+) 411 WP_044139037.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=838346 QPL77_RS19450 WP_003215157.1 3797448..3797993(-) (ssbA) [Bacillus pumilus strain Monterrey_S2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=838346 QPL77_RS19450 WP_003215157.1 3797448..3797993(-) (ssbA) [Bacillus pumilus strain Monterrey_S2]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAATGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376