Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   QPL80_RS10370 Genome accession   NZ_CP126515
Coordinates   1872111..1872824 (-) Length   237 a.a.
NCBI ID   WP_071730199.1    Uniprot ID   -
Organism   Bacillus anthracis strain Mn106-1 head2 chi     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1867111..1877824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL80_RS10355 (QPL80_10375) hitR 1868836..1869513 (+) 678 WP_284566359.1 envelope stress response regulator transcription factor HitR -
  QPL80_RS10360 (QPL80_10380) hitS 1869510..1870580 (+) 1071 WP_284566180.1 envelope stress sensor histidine kinase HitS -
  QPL80_RS10365 (QPL80_10385) - 1870698..1872110 (-) 1413 WP_071730201.1 HAMP domain-containing sensor histidine kinase -
  QPL80_RS10370 (QPL80_10390) scnR 1872111..1872824 (-) 714 WP_071730199.1 response regulator transcription factor Regulator
  QPL80_RS10375 (QPL80_10395) - 1873022..1873372 (-) 351 WP_270699276.1 YxeA family protein -
  QPL80_RS10380 (QPL80_10400) - 1873395..1874126 (-) 732 WP_284566181.1 ABC transporter permease -
  QPL80_RS10385 (QPL80_10405) - 1874139..1874891 (-) 753 WP_284566182.1 ABC transporter permease -
  QPL80_RS10390 (QPL80_10410) - 1874888..1875805 (-) 918 WP_284566183.1 ATP-binding cassette domain-containing protein -
  QPL80_RS10395 (QPL80_10415) - 1876276..1876995 (+) 720 WP_000818985.1 3-ketoacyl-ACP reductase -
  QPL80_RS10400 (QPL80_10420) - 1877145..1877816 (+) 672 WP_136445244.1 O-methyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26955.41 Da        Isoelectric Point: 6.4962

>NTDB_id=838210 QPL80_RS10370 WP_071730199.1 1872111..1872824(-) (scnR) [Bacillus anthracis strain Mn106-1 head2 chi]
MKNLKDKKILIVDDEREIRIMIEKLLRKEGFFRIYATGDCTSALSFCQTNNPDIAILDVMLPDGDGFSLLSSIRQFSTIP
VLFLSARGEDEDRLLGLGLGADDYLVKPFLPRELLLRLIAILKRVYSSSIADRLSTFKLGEQIVDLESAVVHREQKQIPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIHLLTFRGLGYKLLVKETD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=838210 QPL80_RS10370 WP_071730199.1 1872111..1872824(-) (scnR) [Bacillus anthracis strain Mn106-1 head2 chi]
ATGAAAAATTTAAAAGACAAAAAAATATTGATTGTAGATGATGAACGAGAAATCAGAATAATGATTGAAAAACTTTTGAG
AAAAGAGGGATTTTTTCGTATTTATGCTACTGGTGACTGTACCTCTGCTCTATCATTTTGCCAGACAAACAATCCAGATA
TTGCGATTCTAGATGTTATGTTACCTGATGGTGACGGATTTTCATTACTGTCTTCCATTAGGCAATTTTCGACTATACCA
GTTCTTTTTCTTTCCGCGCGGGGAGAAGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACTTGGTAAA
ACCGTTTTTGCCACGTGAGTTGCTATTACGACTCATAGCGATTTTGAAGCGTGTATACTCCTCCTCAATCGCAGATCGTC
TATCTACCTTCAAATTAGGAGAACAAATTGTCGATCTCGAAAGCGCTGTTGTGCACAGAGAACAAAAACAAATTCCCTTG
ACTGCAAAGGAGCATGCCATTCTTGTAAAGCTCTATGAAAATCAAGGACGAATCATTACAAATGATGCCTTATGTCAAGC
GGTTTGGGGAGATGACAGCTACGGCCTTGAGAATACATTAATGGTTCATATCAGACGGATACGTGAAAAGATTGAACTGG
ATCCTTCCAAACCAATCCATCTCCTTACCTTCAGGGGACTAGGTTATAAATTACTAGTAAAGGAGACTGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.784

97.468

0.485
  micA Streptococcus pneumoniae Cp1015

40.435

97.046

0.392
  vicR Streptococcus mutans UA159

39.827

97.468

0.388