Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VF946_RS00360 Genome accession   NZ_CP141824
Coordinates   63048..63638 (+) Length   196 a.a.
NCBI ID   WP_011921679.1    Uniprot ID   A0A0H3N1H3
Organism   Streptococcus suis strain HB18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58048..68638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS00350 - 59431..60954 (+) 1524 WP_024405860.1 quinol oxidase -
  VF946_RS00355 hexB 61072..63009 (+) 1938 WP_012774891.1 DNA mismatch repair endonuclease MutL Machinery gene
  VF946_RS00360 ruvA 63048..63638 (+) 591 WP_011921679.1 Holliday junction branch migration protein RuvA Machinery gene
  VF946_RS00365 - 64363..64932 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  VF946_RS00370 - 64969..66140 (+) 1172 Protein_53 competence/damage-inducible protein A -
  VF946_RS00375 recA 66192..67340 (+) 1149 WP_023369045.1 recombinase RecA Machinery gene
  VF946_RS00380 spx 67576..67974 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  VF946_RS00385 - 68074..68340 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21739.10 Da        Isoelectric Point: 5.0800

>NTDB_id=838140 VF946_RS00360 WP_011921679.1 63048..63638(+) (ruvA) [Streptococcus suis strain HB18]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=838140 VF946_RS00360 WP_011921679.1 63048..63638(+) (ruvA) [Streptococcus suis strain HB18]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAATTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTTGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N1H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408