Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QLQ03_RS08650 Genome accession   NZ_CP126456
Coordinates   1659688..1660230 (-) Length   180 a.a.
NCBI ID   WP_242731383.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1654688..1665230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS08625 - 1654962..1655573 (-) 612 WP_024718443.1 alpha/beta hydrolase -
  QLQ03_RS08630 - 1655570..1656520 (-) 951 WP_017359878.1 ring-cleaving dioxygenase -
  QLQ03_RS08635 - 1656732..1658249 (-) 1518 WP_242731379.1 ABC transporter permease/substrate-binding protein -
  QLQ03_RS08640 - 1658242..1659207 (-) 966 WP_242731381.1 ABC transporter ATP-binding protein -
  QLQ03_RS08645 rpsR 1659407..1659646 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  QLQ03_RS08650 ssbA 1659688..1660230 (-) 543 WP_242731383.1 single-stranded DNA-binding protein SsbA Machinery gene
  QLQ03_RS08655 rpsF 1660267..1660554 (-) 288 WP_008347557.1 30S ribosomal protein S6 -
  QLQ03_RS08660 ychF 1660663..1661763 (-) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  QLQ03_RS08665 - 1661979..1662185 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  QLQ03_RS08670 - 1662480..1663799 (+) 1320 WP_156061474.1 hydrolase -
  QLQ03_RS08675 - 1663815..1664225 (+) 411 WP_024718438.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19632.18 Da        Isoelectric Point: 4.6109

>NTDB_id=837900 QLQ03_RS08650 WP_242731383.1 1659688..1660230(-) (ssbA) [Bacillus altitudinis strain KRS010]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGNLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=837900 QLQ03_RS08650 WP_242731383.1 1659688..1660230(-) (ssbA) [Bacillus altitudinis strain KRS010]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAATCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85

100

0.85
  ssb Latilactobacillus sakei subsp. sakei 23K

54.839

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

58.889

0.372