Detailed information NTG0837752

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QN096_RS08870
• Genome accession: NZ_CP126342
• Coordinates: 1884702..1886924 (+)
• Length: 740 a.a.
• NCBI ID: WP_284548594.1
• Uniprot ID: -
• Organism: Pseudomonas otitidis strain TL17
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1879702..1891924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN096_RS08840 (QN096_08840)	-	1879803..1880096 (-)	294	WP_182850584.1	phosphodiesterase	-
QN096_RS08845 (QN096_08845)	-	1880101..1880682 (-)	582	WP_044404965.1	PilZ domain-containing protein	-
QN096_RS08850 (QN096_08850)	-	1880779..1882029 (+)	1251	WP_236214168.1	lipoprotein-releasing ABC transporter permease subunit	-
QN096_RS08855 (QN096_08855)	lolD	1882031..1882714 (+)	684	WP_236211488.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
QN096_RS08860 (QN096_08860)	-	1882716..1883960 (+)	1245	WP_074968643.1	lipoprotein-releasing ABC transporter permease subunit	-
QN096_RS08865 (QN096_08865)	-	1884024..1884554 (-)	531	WP_044404954.1	DUF2062 domain-containing protein	-
QN096_RS08870 (QN096_08870)	comA	1884702..1886924 (+)	2223	WP_284548594.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QN096_RS08875 (QN096_08875)	exbB	1886997..1887632 (+)	636	WP_107328908.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QN096_RS08880 (QN096_08880)	-	1887629..1888072 (+)	444	WP_044404945.1	biopolymer transporter ExbD	-
QN096_RS08885 (QN096_08885)	lpxK	1888072..1889076 (+)	1005	WP_074968647.1	tetraacyldisaccharide 4'-kinase	-
QN096_RS08890 (QN096_08890)	-	1889112..1889297 (+)	186	WP_069561688.1	Trm112 family protein	-
QN096_RS08895 (QN096_08895)	kdsB	1889297..1890061 (+)	765	WP_044404936.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QN096_RS08900 (QN096_08900)	-	1890061..1890522 (+)	462	WP_160483306.1	low molecular weight protein-tyrosine-phosphatase	-
QN096_RS08905 (QN096_08905)	murB	1890519..1891538 (+)	1020	WP_284548601.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79312.64 Da
• Isoelectric Point: 8.6626

>NTDB_id=837752 QN096_RS08870 WP_284548594.1 1884702..1886924(+) (comA) [Pseudomonas otitidis strain TL17]
MRGFWLALAGGLLALRFLPALPPGWVLLGLAGVGAVLLPWRTRALGVALIGFAWACHCAQVALDDRLDPALDGTTRWLQG
QVVGLPQQDGGVVRFELVPAAIEGLCLPGRMRVSWYGGPEVRSGETWRLAVTLRRPRGLVNPHTFDYEAWLLARHIGATG
TVKAGERLMAAEGPGAWRDDLRQAIQQAEARGRNGTIAALVLGDGSGLSSRDWRHLQDTGTVHLMVISGQHISLLALLLY
GGVAALARLGLWPTRLPWLPCACALALAGALGYGALAGFDVPVQRACLMTALVLLWRLRFRRLGVVTPLLAVFCAVLLVD
PLASLQAGFWLSFAAVALLVLVFAGRLGSPPAWRSAWRAQWALSLALTPALMALALPISLSGPLANLVAVPWVSFVSVPL
SLAGTALHAVPGLGEGLLWLAGLSLEGLFLLLGWIAEAMPAWQAPALEVWSWGLVLLGCLLLILPPALPFRLPGLLLLVL
LVWPPLQRPAPGTADVRVLDVGQGLAVLVLTEHHALLYDAGPRQGGFDLGERVVVPALRGLGVRHLDELLLSHADNDHSG
GAEAVVRVLSVARVISGEVERLPPGLNAQPCEARQWEWDGVHLRTWRWPEARDSNDRSCVLTLEANGERLHLTGDLGQAA
EAAWVESGEALAADWLLAPHHGSRSSSSARLLQAVRPRGALISRGARNAFGHPHPQVLARYRALPAVLYDTAESGALLIR
LGTHGEVSGLRSQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=837752 QN096_RS08870 WP_284548594.1 1884702..1886924(+) (comA) [Pseudomonas otitidis strain TL17]
ATGCGAGGTTTCTGGCTGGCCCTGGCCGGCGGGCTGCTGGCGCTGCGCTTCCTGCCGGCGCTGCCGCCCGGTTGGGTGCT
GCTGGGGCTGGCGGGCGTCGGCGCGGTGCTGCTGCCCTGGCGGACGCGAGCGCTGGGCGTCGCCCTGATCGGCTTCGCCT
GGGCCTGTCACTGCGCCCAGGTCGCCCTCGACGACCGGCTCGACCCGGCGCTGGACGGCACTACCCGCTGGCTGCAGGGG
CAGGTGGTCGGCCTGCCGCAGCAGGACGGCGGCGTGGTGCGCTTCGAACTGGTGCCCGCCGCCATCGAAGGGCTGTGCCT
GCCCGGGCGGATGCGGGTGTCCTGGTACGGCGGGCCGGAGGTGCGCAGCGGCGAGACCTGGCGACTGGCCGTCACCCTTC
GCCGCCCGCGTGGCCTGGTGAACCCCCACACCTTCGACTACGAGGCCTGGCTGCTGGCCCGGCATATCGGTGCCACCGGC
ACGGTGAAGGCGGGCGAGCGGCTCATGGCGGCCGAAGGGCCCGGCGCCTGGCGTGACGACCTGCGCCAGGCCATCCAACA
GGCCGAGGCGCGGGGGCGCAACGGCACCATCGCCGCGCTGGTCCTGGGCGACGGCTCCGGCCTCAGCAGCCGCGACTGGC
GGCACCTGCAGGACACCGGCACGGTCCACCTGATGGTCATCTCCGGGCAGCACATCTCCCTGCTGGCGCTGCTGCTCTAT
GGCGGCGTGGCCGCCCTGGCCCGGCTCGGGCTCTGGCCAACGCGCCTGCCCTGGCTGCCCTGTGCCTGCGCGCTGGCACT
GGCCGGCGCCCTCGGCTATGGGGCGCTGGCCGGGTTCGACGTACCGGTGCAGCGCGCCTGCCTGATGACCGCCCTGGTGC
TGCTCTGGCGCCTGCGTTTCCGCCGGCTCGGGGTGGTCACGCCGCTGTTGGCGGTGTTCTGCGCCGTGCTGCTGGTGGAC
CCGCTGGCCTCCCTGCAGGCGGGCTTCTGGCTCTCCTTCGCGGCCGTGGCGCTGCTGGTGCTGGTGTTCGCCGGGCGCCT
GGGCAGCCCGCCGGCCTGGCGCAGCGCGTGGCGGGCACAGTGGGCCCTGAGCCTGGCGCTGACCCCGGCTCTGATGGCCC
TTGCCCTGCCCATCAGCCTCAGCGGCCCCCTGGCCAACCTGGTGGCGGTGCCCTGGGTCAGCTTCGTCTCGGTGCCGCTG
TCTCTGGCCGGCACGGCCCTGCACGCCGTGCCCGGCCTGGGTGAGGGCCTGCTGTGGCTGGCGGGGCTTTCCCTGGAGGG
GCTCTTCCTTTTATTGGGCTGGATCGCCGAGGCGATGCCGGCCTGGCAGGCGCCTGCACTGGAGGTCTGGAGCTGGGGCC
TGGTGCTGCTGGGCTGCCTGCTGCTGATCCTGCCGCCGGCGCTGCCCTTTCGCCTGCCGGGGCTGCTGTTGCTGGTGCTG
CTGGTTTGGCCGCCCCTGCAGCGGCCCGCGCCCGGTACGGCGGATGTCCGCGTGCTGGACGTGGGGCAGGGCCTGGCAGT
GCTGGTGCTCACCGAGCACCACGCCTTGCTGTATGACGCCGGCCCGCGCCAGGGCGGCTTCGACCTGGGCGAGCGGGTGG
TGGTGCCGGCCCTGCGCGGGCTGGGTGTACGGCATCTGGACGAACTGCTGCTGAGCCACGCCGACAACGACCACTCCGGC
GGGGCCGAGGCGGTGGTGCGCGTCCTGTCCGTGGCGCGGGTGATCAGCGGCGAGGTGGAGCGCCTGCCGCCCGGCCTCAA
CGCCCAGCCCTGCGAAGCCCGCCAGTGGGAGTGGGATGGCGTGCACCTGCGCACCTGGCGCTGGCCCGAGGCCCGCGACA
GCAATGATCGCTCCTGCGTGCTCACCCTCGAGGCCAACGGCGAGCGCCTGCACCTGACCGGCGACCTCGGCCAGGCCGCC
GAAGCCGCCTGGGTGGAGAGCGGCGAGGCTCTCGCAGCGGACTGGCTGCTGGCGCCCCACCATGGCAGTCGCAGCTCCTC
CTCGGCGCGCCTGCTGCAGGCGGTGCGGCCGCGCGGGGCACTAATCTCCCGGGGCGCGCGCAACGCCTTCGGCCATCCCC
ATCCCCAGGTGCTGGCGCGTTACCGTGCGCTGCCGGCGGTTCTTTACGACACCGCCGAGTCCGGCGCGCTGCTGATTCGC
CTGGGCACCCACGGCGAGGTGTCCGGACTGCGGAGCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-465)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.838	97.027	0.6
comA	Ralstonia pseudosolanacearum GMI1000	34.859	100	0.401