Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QN096_RS08875 Genome accession   NZ_CP126342
Coordinates   1886997..1887632 (+) Length   211 a.a.
NCBI ID   WP_107328908.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain TL17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1881997..1892632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS08855 (QN096_08855) lolD 1882031..1882714 (+) 684 WP_236211488.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  QN096_RS08860 (QN096_08860) - 1882716..1883960 (+) 1245 WP_074968643.1 lipoprotein-releasing ABC transporter permease subunit -
  QN096_RS08865 (QN096_08865) - 1884024..1884554 (-) 531 WP_044404954.1 DUF2062 domain-containing protein -
  QN096_RS08870 (QN096_08870) comA 1884702..1886924 (+) 2223 WP_284548594.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QN096_RS08875 (QN096_08875) exbB 1886997..1887632 (+) 636 WP_107328908.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QN096_RS08880 (QN096_08880) - 1887629..1888072 (+) 444 WP_044404945.1 biopolymer transporter ExbD -
  QN096_RS08885 (QN096_08885) lpxK 1888072..1889076 (+) 1005 WP_074968647.1 tetraacyldisaccharide 4'-kinase -
  QN096_RS08890 (QN096_08890) - 1889112..1889297 (+) 186 WP_069561688.1 Trm112 family protein -
  QN096_RS08895 (QN096_08895) kdsB 1889297..1890061 (+) 765 WP_044404936.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QN096_RS08900 (QN096_08900) - 1890061..1890522 (+) 462 WP_160483306.1 low molecular weight protein-tyrosine-phosphatase -
  QN096_RS08905 (QN096_08905) murB 1890519..1891538 (+) 1020 WP_284548601.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22935.08 Da        Isoelectric Point: 7.2819

>NTDB_id=837753 QN096_RS08875 WP_107328908.1 1886997..1887632(+) (exbB) [Pseudomonas otitidis strain TL17]
MWELVKAGGWMMLPIILSSVVATAIIAERLWTLRKNRVAPPQLLGQVWRMVKDKQLNSQKLKELRASSPLGEVLAAGLAN
SKHGRDIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFGGFMDNGMANAPALAGGIGKALITTAA
GLMVAIPAVFFHRFLLRRVDELVVAMEQDAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=837753 QN096_RS08875 WP_107328908.1 1886997..1887632(+) (exbB) [Pseudomonas otitidis strain TL17]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCGTGGTCGCCACCGCCATCATCGC
CGAGCGTCTCTGGACGCTGCGCAAGAACCGTGTCGCACCGCCGCAACTGCTGGGTCAGGTCTGGCGCATGGTCAAGGACA
AGCAGCTCAACAGCCAGAAGCTCAAGGAGCTGCGCGCCTCCTCGCCGCTGGGTGAGGTGCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGCCGGGACATCATGAAGGAGTGCATCGAGGAGGCCGCGTCCCGCGTCATCCACGAGCTTGAGCGCTACCT
CAACACCCTCGGCACCATTGCCGCCATGGGCCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCGAGATCTTCG
GCGGCTTCATGGACAACGGCATGGCCAACGCCCCGGCCCTGGCCGGCGGTATCGGCAAGGCGCTGATCACCACCGCCGCC
GGCCTGATGGTCGCCATCCCCGCCGTGTTCTTCCACCGCTTCCTGCTGCGTCGTGTCGACGAGCTGGTGGTGGCCATGGA
ACAGGACGCCATCAAGCTGGTGGAAGTGACCCAGGGCGACCGTGAGGTGGACTTCGCAGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.621

100

0.796