Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   VLJ87_RS20895 Genome accession   NZ_CP141770
Coordinates   4553621..4553950 (-) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain PA14-GFP     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4548621..4558950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLJ87_RS20880 uvrB 4550008..4552020 (-) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene
  VLJ87_RS20885 - 4552208..4553404 (+) 1197 WP_003110849.1 amino acid aminotransferase -
  VLJ87_RS20895 comEA/comE1 4553621..4553950 (-) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  VLJ87_RS20900 - 4554141..4556138 (-) 1998 WP_003138484.1 polysaccharide biosynthesis protein -
  VLJ87_RS20905 - 4556583..4557599 (-) 1017 WP_003138482.1 MraY family glycosyltransferase -
  VLJ87_RS20910 - 4557599..4558552 (-) 954 WP_003138480.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=837753 VLJ87_RS20895 WP_003138486.1 4553621..4553950(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA14-GFP]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=837753 VLJ87_RS20895 WP_003138486.1 4553621..4553950(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA14-GFP]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385