Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QN096_RS05445 Genome accession   NZ_CP126342
Coordinates   1159163..1160503 (+) Length   446 a.a.
NCBI ID   WP_284547938.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain TL17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1154163..1165503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS05420 (QN096_05420) pgeF 1154353..1155078 (-) 726 WP_284547935.1 peptidoglycan editing factor PgeF -
  QN096_RS05425 (QN096_05425) rluD 1155078..1156049 (-) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QN096_RS05430 (QN096_05430) - 1156197..1157195 (+) 999 WP_284547936.1 outer membrane protein assembly factor BamD -
  QN096_RS05435 (QN096_05435) - 1157342..1157578 (+) 237 WP_044410363.1 PP0621 family protein -
  QN096_RS05440 (QN096_05440) pilS 1157565..1159160 (+) 1596 WP_284547937.1 ATP-binding protein Regulator
  QN096_RS05445 (QN096_05445) pilR 1159163..1160503 (+) 1341 WP_284547938.1 sigma-54 dependent transcriptional regulator Regulator
  QN096_RS05450 (QN096_05450) - 1160516..1161598 (-) 1083 WP_284547939.1 FAD-dependent oxidoreductase -
  QN096_RS05455 (QN096_05455) - 1162299..1162772 (+) 474 WP_284547940.1 GspH/FimT family pseudopilin -
  QN096_RS05460 (QN096_05460) - 1163361..1164095 (+) 735 WP_284547941.1 PilW family protein -
  QN096_RS05465 (QN096_05465) - 1164092..1164664 (+) 573 WP_284547942.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49986.29 Da        Isoelectric Point: 6.0001

>NTDB_id=837748 QN096_RS05445 WP_284547938.1 1159163..1160503(+) (pilR) [Pseudomonas otitidis strain TL17]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGQELVQYIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGESDEEASVDSRLLGESPPMRALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRASHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAAHGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLFYRLNVIELGVPPLRERREDIPRLADV
MLKRLAEACSLPAATLTRDALEKLKTYRFPGNVRELENMLERAYTLCENDQIQPHDLRFTETAGAAEGGEADLAKIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=837748 QN096_RS05445 WP_284547938.1 1159163..1160503(+) (pilR) [Pseudomonas otitidis strain TL17]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCCGCGAGTGGCTGGCCCGCGAACCGTTCGATCTCTGCCTGACGG
ACATGCGCCTGCCCGATGGCACCGGGCAGGAGTTGGTGCAGTACATCCAGCAGCGCCATCCCCAGGTGCCGGTGGCCATG
ATCACGGCCTACGGCAGCCTGGATACCGCCATCAATGCCCTCAAGGCCGGTGCCTTCGACTTCCTGACCAAGCCAGTGGA
CCTTGGCCGTCTGCGCGAGCTGGTGGCAACTGCCCTGCGGCTGCGCAGCGGCGAGTCGGATGAAGAAGCCAGCGTCGACA
GCCGCCTGCTGGGCGAATCGCCCCCCATGCGGGCGTTGCGCAACCAGATCCAGAAGCTCGCCCGCAGCCAGGCGCCCGTC
TACATCAGCGGCGAATCGGGCAGCGGTAAGGAACTGGTCGCACGACTCATCCATGAGCAAGGCCCGCGCGCCAGTCACCC
CTTCGTGCCGGTGAACTGCGGTGCCATTCCGTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCA
CCGGCGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCTGCTCACGGCGGCACCCTGTTCCTCGACGAAGTGGCGGACCTG
CCGCTGCCCATGCAGGTCAAGCTGCTGCGGGCCATCCAAGAGAAGGCGGTACGCGCCGTCGGCGGCCAGCAAGAGGTGGT
GGTGGACGTGCGCATCCTCAGTGCCACTCACAAGGACCTGGCTGCCGAGGTGGCTGCCGGGCGATTCCGCCAGGACCTGT
TCTACCGGCTCAACGTGATCGAACTGGGGGTGCCGCCGTTGCGTGAGCGCCGCGAAGACATTCCCCGCCTGGCGGACGTG
ATGCTCAAGCGCCTGGCCGAAGCCTGCTCGCTGCCGGCCGCGACCCTTACCCGTGATGCGCTGGAGAAGCTCAAGACCTA
CCGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACCCTGTGCGAGAACGACCAGATCCAGC
CTCATGACCTGCGCTTTACCGAGACTGCGGGCGCGGCAGAGGGCGGCGAGGCGGACCTTGCCAAGATCGACAACCTCGAG
GACTACCTTGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTGGAAGAGACCCGCTGGAACCGCACGGCAGCAGCCCA
ACGTCTTGGGCTGACCTTCCGTTCCATGCGTTACAGGCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.341

100

0.883
  pilR Acinetobacter baumannii strain A118

50.327

100

0.518