Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QN096_RS05440 Genome accession   NZ_CP126342
Coordinates   1157565..1159160 (+) Length   531 a.a.
NCBI ID   WP_284547937.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain TL17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152565..1164160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS05420 (QN096_05420) pgeF 1154353..1155078 (-) 726 WP_284547935.1 peptidoglycan editing factor PgeF -
  QN096_RS05425 (QN096_05425) rluD 1155078..1156049 (-) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QN096_RS05430 (QN096_05430) - 1156197..1157195 (+) 999 WP_284547936.1 outer membrane protein assembly factor BamD -
  QN096_RS05435 (QN096_05435) - 1157342..1157578 (+) 237 WP_044410363.1 PP0621 family protein -
  QN096_RS05440 (QN096_05440) pilS 1157565..1159160 (+) 1596 WP_284547937.1 ATP-binding protein Regulator
  QN096_RS05445 (QN096_05445) pilR 1159163..1160503 (+) 1341 WP_284547938.1 sigma-54 dependent transcriptional regulator Regulator
  QN096_RS05450 (QN096_05450) - 1160516..1161598 (-) 1083 WP_284547939.1 FAD-dependent oxidoreductase -
  QN096_RS05455 (QN096_05455) - 1162299..1162772 (+) 474 WP_284547940.1 GspH/FimT family pseudopilin -
  QN096_RS05460 (QN096_05460) - 1163361..1164095 (+) 735 WP_284547941.1 PilW family protein -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 59156.36 Da        Isoelectric Point: 8.1062

>NTDB_id=837747 QN096_RS05440 WP_284547937.1 1157565..1159160(+) (pilS) [Pseudomonas otitidis strain TL17]
MASTESPSLASNQIRRIFRLYNLYRLLIGLALVGLISSELDSELLDLARVQLFRNASWFYLLLNILIALMVRRPQHMLQV
FSLALVDVILLSCIFYAAGGSPSGIGNLIIVAVAIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSRPEAANQYVQAGAL
GALCFAGALFVQGISRRLQLSETLAEQRAADVANLEALNALILQRMRTGILVLDSRHRVLLANQAAQAMLGHDGLAGRPL
GPHCPELLKRLEQWWDNPTLRPQSLQPVPDGAVLQPSFVQLQRGEQLDTLVFLEDISQIAQQAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLQESEELESPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRSASPV
GQTLHLETNPGSIQTRMDPHQLTQVLTNLVQNGLRYSAQKHRQGQVWLKLFRDAESDLPILEVMDDGPGVAEEQLHHLFE
PFHTTENKGTGLGLYISRELCESNQARLDYRPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=837747 QN096_RS05440 WP_284547937.1 1157565..1159160(+) (pilS) [Pseudomonas otitidis strain TL17]
GTGGCGAGCACTGAGTCGCCCTCCCTGGCGAGCAATCAGATCCGACGGATCTTCCGCCTTTACAACCTGTACCGCCTGCT
CATCGGCCTGGCACTGGTCGGGCTGATTTCCAGTGAGCTGGACAGCGAGTTGCTGGATCTGGCTCGCGTGCAGCTATTCC
GCAATGCCAGCTGGTTCTACCTGCTGTTGAACATCCTCATTGCGCTGATGGTGCGCCGCCCCCAGCACATGCTGCAGGTG
TTCAGCCTGGCGCTGGTGGACGTCATCCTGCTGTCCTGCATCTTCTATGCAGCGGGCGGCTCGCCCAGCGGCATCGGCAA
CCTGATCATCGTTGCGGTGGCCATTGCCAACATCCTGCTGCGTGGGCGTATCGGGCTGCTGATCGCCGCTGTCGCCGCCA
TCGGGATGATCTACCTGACTTTCTACCTGAGCTTGTCCCGCCCGGAAGCGGCCAACCAGTACGTACAGGCCGGTGCGCTC
GGTGCCTTGTGCTTTGCAGGCGCCCTGTTCGTGCAGGGCATCAGCCGGCGTCTGCAGTTGAGCGAGACCCTGGCCGAGCA
GCGTGCTGCCGACGTGGCCAATCTGGAAGCGCTCAACGCGCTCATCCTGCAGCGCATGCGCACGGGCATCCTGGTGCTGG
ACAGCCGTCACCGGGTGTTGCTGGCCAACCAGGCTGCCCAGGCGATGCTGGGGCACGACGGGCTGGCGGGGCGCCCCCTC
GGGCCGCACTGCCCGGAGCTGCTCAAGCGACTGGAGCAGTGGTGGGACAACCCGACCCTCCGCCCCCAGAGCCTGCAGCC
GGTACCCGACGGCGCAGTGCTGCAGCCCAGCTTCGTCCAGCTGCAGCGTGGCGAGCAGCTGGATACGCTGGTCTTCCTCG
AAGACATCTCGCAGATCGCCCAGCAGGCGCAGCAGCTGAAGCTGGCTTCCCTGGGACGGCTGACCGCCGGTATCGCCCAT
GAGATCCGCAATCCCCTAGGCGCCATCAGTCATGCCGCCCAGCTGTTGCAGGAGTCCGAAGAGCTGGAGAGCCCCGACCG
CCGCCTGGCGCAGATCATCCAGGACCATTCCCGGCGGATGAACCTCGTCATCGAAAACGTCCTGCAACTGTCGCGGCGCC
GCCAGTCGGAACCGCAGTTGCTGGATCTCAAGTACTGGCTGCACCGATTCGCCAGCGAGTTCCGCAGCGCCTCACCGGTG
GGCCAGACACTTCACCTGGAAACCAACCCGGGCAGCATTCAGACCCGCATGGACCCCCACCAGCTCACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGCGCAGAAGCATCGCCAGGGGCAGGTCTGGCTGAAACTCTTCCGTGACG
CCGAGAGCGACCTGCCCATACTGGAAGTGATGGACGACGGCCCCGGCGTCGCCGAGGAGCAGCTCCATCACCTGTTCGAG
CCCTTCCACACTACGGAGAACAAGGGCACCGGGCTTGGCCTGTACATCTCCCGCGAGTTGTGCGAGAGCAACCAGGCCCG
CCTTGACTATCGACCCCGCGAAGGCGGCGGCAGCTGTTTCCGCATCACCTTCGCCCATCCGCGAAAACTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

PAS domain (PAS_8)

(203-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.686

98.493

0.667