Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QN289_RS07885 Genome accession   NZ_CP126312
Coordinates   1498944..1499387 (-) Length   147 a.a.
NCBI ID   WP_284182764.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain KFRI-K200347     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493944..1504387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN289_RS07870 (QN289_07870) secA 1495007..1497370 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  QN289_RS07875 (QN289_07875) raiA 1497599..1498144 (-) 546 WP_004270226.1 ribosome-associated translation inhibitor RaiA -
  QN289_RS07880 (QN289_07880) comFC 1498270..1498800 (-) 531 WP_155275694.1 ComF family protein Machinery gene
  QN289_RS07885 (QN289_07885) comFA 1498944..1499387 (-) 444 WP_284182764.1 helicase-related protein Machinery gene
  QN289_RS07890 (QN289_07890) comFA 1499387..1500277 (-) 891 WP_284182765.1 DEAD/DEAH box helicase Machinery gene
  QN289_RS07895 (QN289_07895) - 1500334..1500996 (+) 663 WP_039099348.1 YigZ family protein -
  QN289_RS07900 (QN289_07900) - 1501021..1502109 (-) 1089 WP_004270225.1 MraY family glycosyltransferase -
  QN289_RS07905 (QN289_07905) hemH 1502219..1502932 (-) 714 WP_311732756.1 ferrochelatase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16525.15 Da        Isoelectric Point: 10.5177

>NTDB_id=837544 QN289_RS07885 WP_284182764.1 1498944..1499387(-) (comFA) [Latilactobacillus curvatus strain KFRI-K200347]
MRNLLRKCLQEQRLLLFVPQVRDLEAVQQSVVRALPHITVNTVHAGDPNQLDKIAAFRAGCGDVLITTTVLERGVTFKNI
AVFVLGAEHVVFTESVLVQIAGRAGRQQEHAANPVYFFYADYTVAIQRACQQIKRQNRKGRRLQSTV

Nucleotide


Download         Length: 444 bp        

>NTDB_id=837544 QN289_RS07885 WP_284182764.1 1498944..1499387(-) (comFA) [Latilactobacillus curvatus strain KFRI-K200347]
ATGCGTAACTTACTCAGGAAGTGTCTTCAAGAACAACGCTTATTATTATTTGTGCCACAGGTAAGGGATTTAGAGGCGGT
TCAGCAGAGCGTTGTTCGGGCATTGCCACACATTACAGTGAACACGGTACATGCTGGCGATCCTAATCAATTAGACAAGA
TAGCGGCCTTTAGAGCAGGATGCGGGGACGTGCTGATTACGACGACAGTTCTAGAACGAGGCGTAACGTTTAAAAATATT
GCGGTGTTTGTTCTTGGTGCAGAACACGTGGTCTTCACTGAATCAGTGCTTGTACAGATTGCTGGCCGAGCCGGACGACA
GCAAGAGCATGCTGCCAATCCGGTTTATTTTTTCTACGCGGATTACACGGTCGCTATTCAGCGTGCGTGTCAACAAATTA
AACGACAAAATCGAAAAGGACGGCGATTACAATCCACTGTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

59.732

100

0.605
  comFA Bacillus subtilis subsp. subtilis str. 168

42.105

90.476

0.381