Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QN289_RS07880 Genome accession   NZ_CP126312
Coordinates   1498270..1498800 (-) Length   176 a.a.
NCBI ID   WP_155275694.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain KFRI-K200347     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493270..1503800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN289_RS07870 (QN289_07870) secA 1495007..1497370 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  QN289_RS07875 (QN289_07875) raiA 1497599..1498144 (-) 546 WP_004270226.1 ribosome-associated translation inhibitor RaiA -
  QN289_RS07880 (QN289_07880) comFC 1498270..1498800 (-) 531 WP_155275694.1 ComF family protein Machinery gene
  QN289_RS07885 (QN289_07885) comFA 1498944..1499387 (-) 444 WP_284182764.1 helicase-related protein Machinery gene
  QN289_RS07890 (QN289_07890) comFA 1499387..1500277 (-) 891 WP_284182765.1 DEAD/DEAH box helicase Machinery gene
  QN289_RS07895 (QN289_07895) - 1500334..1500996 (+) 663 WP_039099348.1 YigZ family protein -
  QN289_RS07900 (QN289_07900) - 1501021..1502109 (-) 1089 WP_004270225.1 MraY family glycosyltransferase -
  QN289_RS07905 (QN289_07905) hemH 1502219..1502932 (-) 714 WP_311732756.1 ferrochelatase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20695.83 Da        Isoelectric Point: 9.7337

>NTDB_id=837543 QN289_RS07880 WP_155275694.1 1498270..1498800(-) (comFC) [Latilactobacillus curvatus strain KFRI-K200347]
MTTQGVCPDCQRWQQLYPGEQFTNRALLTYNEPMQQYFQRYKGQGDYRLRHVFQRLIRENFPVQRQTAYIPVPTDPTHLQ
SRGFNPVVGLYEDCFPLTPLLQKLPTEKGQAQKNRAERLATPQFFKCAQNMLLGSKVQQLILLDDIYTTGRTLWHAQQCL
RKRYQTLPIHAITLVH

Nucleotide


Download         Length: 531 bp        

>NTDB_id=837543 QN289_RS07880 WP_155275694.1 1498270..1498800(-) (comFC) [Latilactobacillus curvatus strain KFRI-K200347]
ATGACAACCCAGGGGGTGTGTCCGGATTGCCAGAGATGGCAGCAACTGTATCCAGGCGAACAATTTACTAATCGAGCGTT
GTTAACATACAACGAACCAATGCAACAGTATTTTCAACGCTATAAGGGACAGGGGGATTATCGATTACGTCACGTATTTC
AACGGCTGATTCGAGAAAATTTTCCTGTGCAACGGCAAACGGCGTATATCCCAGTCCCGACTGATCCAACACATTTGCAA
AGCCGCGGATTCAATCCGGTGGTAGGCTTATACGAGGACTGTTTTCCACTGACCCCATTGTTGCAGAAGCTACCAACTGA
AAAAGGACAAGCACAAAAAAATCGTGCAGAGCGCTTAGCAACGCCGCAATTTTTTAAATGCGCGCAGAACATGCTGTTGG
GTTCCAAGGTGCAACAGTTAATTTTGTTGGATGATATTTATACCACTGGGCGCACGTTATGGCATGCTCAGCAGTGTCTC
CGCAAGCGATACCAAACGCTGCCAATTCACGCAATTACTTTAGTCCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

65.493

80.682

0.528